View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_1D_high_28 (Length: 218)

Name: NF3306_1D_high_28
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_1D_high_28
NF3306_1D_high_28
[»] scaffold0391 (1 HSPs)
scaffold0391 (41-199)||(6549-6721)
[»] chr7 (20 HSPs)
chr7 (32-111)||(41519072-41519151)
chr7 (32-121)||(37473639-37473728)
chr7 (32-105)||(45709670-45709743)
chr7 (32-104)||(3174969-3175041)
chr7 (32-104)||(7309398-7309469)
chr7 (32-104)||(45228987-45229059)
chr7 (54-104)||(20335815-20335865)
chr7 (39-115)||(2495805-2495881)
chr7 (32-104)||(9183153-9183225)
chr7 (32-104)||(25590653-25590725)
chr7 (68-104)||(48771980-48772016)
chr7 (32-111)||(15137588-15137667)
chr7 (32-107)||(21558167-21558242)
chr7 (54-120)||(24513823-24513889)
chr7 (32-105)||(22035439-22035512)
chr7 (71-104)||(25132379-25132412)
chr7 (39-104)||(45976892-45976957)
chr7 (32-104)||(5934163-5934235)
chr7 (32-104)||(15905636-15905707)
chr7 (32-104)||(26703167-26703239)
[»] chr2 (17 HSPs)
chr2 (53-120)||(31573624-31573691)
chr2 (32-115)||(5952191-5952274)
chr2 (39-104)||(25637193-25637258)
chr2 (32-105)||(33582014-33582087)
chr2 (32-115)||(3001410-3001493)
chr2 (32-103)||(42222924-42222995)
chr2 (54-120)||(13803521-13803587)
chr2 (54-104)||(28846733-28846783)
chr2 (38-103)||(26545883-26545948)
chr2 (32-104)||(19016073-19016145)
chr2 (40-103)||(4262273-4262335)
chr2 (32-115)||(14780537-14780620)
chr2 (32-105)||(35203345-35203418)
chr2 (62-115)||(40791482-40791535)
chr2 (32-77)||(41504898-41504943)
chr2 (33-105)||(19244150-19244222)
chr2 (32-104)||(29503313-29503384)
[»] scaffold0008 (1 HSPs)
scaffold0008 (39-120)||(49332-49413)
[»] chr6 (10 HSPs)
chr6 (35-108)||(9875241-9875314)
chr6 (38-104)||(30127442-30127508)
chr6 (32-86)||(32250812-32250866)
chr6 (32-104)||(12234469-12234541)
chr6 (32-104)||(33549146-33549218)
chr6 (33-104)||(28841456-28841527)
chr6 (39-104)||(346572-346637)
chr6 (38-87)||(6519138-6519187)
chr6 (39-87)||(168074-168122)
chr6 (32-104)||(12633051-12633123)
[»] chr8 (10 HSPs)
chr8 (32-104)||(968404-968476)
chr8 (39-88)||(31087227-31087276)
chr8 (51-105)||(12281535-12281589)
chr8 (32-105)||(31408084-31408157)
chr8 (41-87)||(35690035-35690081)
chr8 (54-103)||(11928715-11928764)
chr8 (32-101)||(40791857-40791926)
chr8 (32-104)||(6536562-6536634)
chr8 (32-104)||(8485041-8485113)
chr8 (32-104)||(11492035-11492107)
[»] chr1 (16 HSPs)
chr1 (32-120)||(16893420-16893508)
chr1 (32-103)||(2220015-2220086)
chr1 (32-104)||(12587312-12587383)
chr1 (39-115)||(28283562-28283638)
chr1 (32-87)||(18334984-18335039)
chr1 (38-117)||(40814376-40814455)
chr1 (32-115)||(44961796-44961879)
chr1 (54-104)||(52336758-52336808)
chr1 (51-104)||(4566590-4566643)
chr1 (32-85)||(23471047-23471100)
chr1 (54-115)||(51814525-51814586)
chr1 (71-103)||(9117162-9117194)
chr1 (39-87)||(9643778-9643826)
chr1 (33-77)||(16019385-16019429)
chr1 (65-105)||(26232356-26232396)
chr1 (32-104)||(42949254-42949326)
[»] chr4 (17 HSPs)
chr4 (32-105)||(49262646-49262719)
chr4 (39-99)||(32662801-32662861)
chr4 (32-104)||(2184994-2185066)
chr4 (32-104)||(7949416-7949488)
chr4 (32-84)||(30584784-30584836)
chr4 (32-104)||(30938181-30938253)
chr4 (32-104)||(51954156-51954228)
chr4 (38-104)||(13015469-13015535)
chr4 (38-104)||(39509112-39509178)
chr4 (54-104)||(49576878-49576928)
chr4 (32-85)||(18404845-18404898)
chr4 (32-105)||(47386753-47386826)
chr4 (32-104)||(21660106-21660178)
chr4 (32-104)||(21668870-21668942)
chr4 (52-104)||(24124037-24124089)
chr4 (32-104)||(37109313-37109385)
chr4 (32-104)||(38838839-38838911)
[»] scaffold0258 (1 HSPs)
scaffold0258 (32-104)||(15285-15357)
[»] chr5 (9 HSPs)
chr5 (32-104)||(16773849-16773921)
chr5 (32-104)||(29173532-29173604)
chr5 (32-104)||(22020824-22020896)
chr5 (32-120)||(43442222-43442310)
chr5 (38-104)||(12883882-12883948)
chr5 (32-81)||(20495907-20495956)
chr5 (39-88)||(30000174-30000223)
chr5 (71-104)||(30109309-30109342)
chr5 (55-100)||(30700603-30700648)
[»] chr3 (19 HSPs)
chr3 (32-104)||(10499071-10499143)
chr3 (32-104)||(44743817-44743889)
chr3 (32-104)||(51903840-51903912)
chr3 (32-105)||(19154672-19154745)
chr3 (32-104)||(47454579-47454651)
chr3 (32-104)||(52769945-52770017)
chr3 (53-104)||(14186689-14186740)
chr3 (73-111)||(2597223-2597261)
chr3 (38-104)||(30510167-30510233)
chr3 (32-101)||(11090127-11090196)
chr3 (32-104)||(2667904-2667976)
chr3 (32-104)||(4844473-4844545)
chr3 (32-104)||(4870169-4870241)
chr3 (32-104)||(10445101-10445173)
chr3 (32-104)||(10828695-10828767)
chr3 (65-105)||(20501737-20501777)
chr3 (32-88)||(32639003-32639059)
chr3 (32-104)||(45308864-45308936)
chr3 (32-104)||(49397503-49397575)
[»] scaffold0194 (1 HSPs)
scaffold0194 (54-104)||(13030-13080)
[»] scaffold0126 (1 HSPs)
scaffold0126 (54-104)||(25331-25381)
[»] scaffold0118 (1 HSPs)
scaffold0118 (54-120)||(41617-41683)
[»] scaffold0004 (1 HSPs)
scaffold0004 (32-82)||(380308-380358)
[»] scaffold0074 (1 HSPs)
scaffold0074 (39-104)||(45728-45793)
[»] scaffold0471 (1 HSPs)
scaffold0471 (52-104)||(8624-8676)
[»] scaffold0368 (1 HSPs)
scaffold0368 (32-104)||(14927-14999)
[»] scaffold0006 (1 HSPs)
scaffold0006 (53-105)||(162992-163044)


Alignment Details
Target: scaffold0391 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 6549 - 6721
Alignment:
Q  41 aattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa--------------accaacccaaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||              |||||||||||    
T  6549 aattaacctacttaaattgacatcggagataatcgaacctgaaacttcaagaaggagcacactcttaaatctcaaaccaatatcatcaaaccaacccaaa 6648  T
Q  127 tgagttatgaaaatgtaacttattccgttagacttaatcgaagagtcttgcagaaggaaatagactcctacct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6649 tgagttatgaaaatgtaacttattccgttagacttaatcgaagagtcttgcagaaggaaatagactcctacct 6721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 41519072 - 41519151
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatc 111  Q
    ||||| |||||||| || ||  ||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||    
T  41519072 aagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacactcttaaatc 41519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 37473728 - 37473639
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaac 121  Q
    ||||| ||||||||||| || |||||||||||  | || ||||||||||||||||||||| ||||||| |||| || ||| |||||||||    
T  37473728 aagaagctaaattaacccacctaaattgacattagggagaatcgaacctgagacctcaaggaggagcaaactcctagatcccaaaccaac 37473639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 45709670 - 45709743
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| |||| ||| || || |||||||  ||||||||||||||||||||||||||| || |||||||||||||    
T  45709670 aagaagctaagttagcccacctaaattggtatcggagataatcgaacctgagacctcgaggaggagcacactct 45709743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 3175041 - 3174969
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||||| |  |||||||| || ||||| |||||||||||||||||| ||| |||||||||||    
T  3175041 aagaagctaaattaacccaactaaattgatattggagagaatcgaacctgagacctcgagatggagcacactc 3174969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 7309469 - 7309398
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||||||||||||| |||||| |||||||| ||||||||| || ||||||||||||    
T  7309469 aagaagctaaattagcccacttaaattgaca-cggagagaatcgaacttgagacctcgaggaggagcacactc 7309398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 45228987 - 45229059
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || |||||||||||||  ||||| |||||||||| | ||||||||||| |||||||||    
T  45228987 aagaagctaaattagcccacttaaattgacactggagagaatcgaacctaaaacctcaagaagaagcacactc 45229059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 20335815 - 20335865
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||| || |||||||||||||||||| || ||||||||||||    
T  20335815 aaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactc 20335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 2495805 - 2495881
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    |||||||||| | ||||||||| ||  |||||||||||||||||||  | ||| ||||||||||||  |||||||||    
T  2495805 taaattaacccatttaaattgatattagagataatcgaacctgagattttaaggaggagcacactcacaaatctcaa 2495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 9183153 - 9183225
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||| || ||  ||||||||| | |||||||||||||||||||| |  || ||||||||||||    
T  9183153 aagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagcacactc 9183225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 25590725 - 25590653
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||| ||||||||| || ||| ||||||||| |||||||| || ||||||||||||    
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactc 25590653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 48772016 - 48771980
Alignment:
Q  68 gataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48772016 gataatcgaacctgagacctcaaggaggagcacactc 48771980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 15137667 - 15137588
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatc 111  Q
    |||||||||||||| || ||  ||||||||| | |||| |||| ||||||||||||  || |||||||||||| ||||||    
T  15137667 aagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatc 15137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 21558242 - 21558167
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactctta 107  Q
    ||||| ||||||||||| || ||||||| || | |||| |||||||||||||||||  || ||||||||| |||||    
T  21558242 aagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacattctta 21558167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 24513889 - 24513823
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    ||||||||||| | || ||||||||||||||||||||| || || ||||||  ||||||||| ||||    
T  24513889 aaattgacatcagtgaaaatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaa 24513823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 22035512 - 22035439
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| ||||||||  | |||||||||||||  ||||| ||||||||||| | |||| || |||||||||||||    
T  22035512 aagaagctaaattagtccacttaaattgacacaggagagaatcgaacctgggtcctcgaggaggagcacactct 22035439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 25132379 - 25132412
Alignment:
Q  71 aatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||||||| ||||||||||||||||    
T  25132379 aatcgaacctgagaccttaagaaggagcacactc 25132412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 45976892 - 45976957
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||||||||||| |||| |||||||  |||| | | |||| ||| ||||||||||||    
T  45976892 taaattaacctacttaaattggcatcagagataaatgaacttaaaaccttaaggaggagcacactc 45976957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 5934235 - 5934163
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||||  | || |||||||||| | |||  |||||||| ||| |||||||| ||||||||||||    
T  5934235 aagaaactaaattagtccacctaaattgacaccagagggaatcgaacatgaaacctcaaggaggagcacactc 5934163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 15905636 - 15905707
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||||| ||  ||||||||||  | || ||||||||||||||||| ||| ||||||||||||    
T  15905636 aagaagctaaattaacccacccaaattgacattagggagaatcgaacctgagacct-aaggaggagcacactc 15905707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 26703239 - 26703167
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||| |||  | |||||  |||||||||||||| |||||||||||||||    
T  26703239 aagaatctaaattagcccacctaaattggcattagggataaatgaacctgagacctcgagaaggagcacactc 26703167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 31573624 - 31573691
Alignment:
Q  53 taaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    ||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||| | ||||||||||||    
T  31573624 taaattgacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatctcaaaccaa 31573691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 5952274 - 5952191
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    ||||||||||||||||| |||||||||||||||  |||| ||| ||||||| || | ||| |||||| |||||| |||||||||    
T  5952274 aagaaactaaattaacccacttaaattgacatcaaagatgatcaaacctgacactttaaggaggagcccactctcaaatctcaa 5952191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 25637258 - 25637193
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||| || || ||||||| ||||||||| || ||||||||||||||| |||||||||||||||    
T  25637258 taaattagcccacctaaattggcatcggagagaaccgaacctgagacctcgagaaggagcacactc 25637193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 33582087 - 33582014
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| ||||||||  | || |||||||||||  |||| ||||||||||||||||||||| |||||||||||||    
T  33582087 aagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactct 33582014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 3001493 - 3001410
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    ||||| |||||||| || || |||| || || | ||||||||||||||||||| |||||| |||||||||||| || |||||||    
T  3001493 aagaacctaaattagcccacataaactggcaccagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaa 3001410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42222995 - 42222924
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 103  Q
    ||||| ||||||||||| ||  ||||||||| || ||| |||||||||| |||| |||||||||||||||||    
T  42222995 aagaatctaaattaacccacccaaattgacaccgaagagaatcgaacctaagacttcaagaaggagcacact 42222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 13803587 - 13803521
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    |||||| |||| ||||||||||||||||||||||  || |||||||||||| ||| |||||| ||||    
T  13803587 aaattggcatcagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaa 13803521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 28846783 - 28846733
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||| |||||||||||||||||| || || ||||||||||||    
T  28846783 aaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactc 28846733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 26545948 - 26545883
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 103  Q
    ||||||||||| || |||||||| |||| ||| |||| ||| ||||||||| ||||||||||||||    
T  26545948 ctaaattaacccacctaaattgatatcgaagagaatcaaacttgagacctcgagaaggagcacact 26545883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 19016145 - 19016073
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| ||||||||||||| || ||| || |||| ||| ||||||||| || ||||||||||||    
T  19016145 aagaagctaaattagcctacttaaattggcaccggggagaatcaaacttgagacctcgaggaggagcacactc 19016073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 4262273 - 4262335
Alignment:
Q  40 aaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 103  Q
    |||||||||||| |||||||||  |||||| |||||||||||||||||  || |||||||||||    
T  4262273 aaattaacctacctaaattgacc-cggagagaatcgaacctgagaccttgaggaggagcacact 4262335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 14780620 - 14780537
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    ||||| |||||||| || ||| |||||| |||||| ||  ||||||||||||||||  | |||||||||| ||| |||||||||    
T  14780620 aagaagctaaattagcccactcaaattggcatcggggaggatcgaacctgagaccttgaaaaggagcacattctcaaatctcaa 14780537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 35203345 - 35203418
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| ||||||||||| ||||||||||||| |  |||||||||||| |||||| |  || | |||||||||||    
T  35203345 aagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagactttgaggatgagcacactct 35203418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 40791482 - 40791535
Alignment:
Q  62 atcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    ||||| || |||||||| ||||||||  |||||||||||||||| |||||||||    
T  40791482 atcggggagaatcgaacttgagaccttgagaaggagcacactctcaaatctcaa 40791535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 41504898 - 41504943
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaa 77  Q
    ||||| ||||||||||| ||||||||||||| |||||| |||||||    
T  41504898 aagaagctaaattaacccacttaaattgacaccggagagaatcgaa 41504943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 19244222 - 19244150
Alignment:
Q  33 agaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||||||||||| || ||| |||||| || | |||| |||||||||||||||||   | |||||||||||||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactct 19244150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 29503384 - 29503313
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||  || ||||||||||||| ||| || |||||||||||||||||  || ||||||||||||    
T  29503384 aagaagctaaatttgcccacttaaattgacaccgg-gagaatcgaacctgagaccttgaggaggagcacactc 29503313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 49413 - 49332
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    |||||||||| ||||||||||||| |||||| |||||||||||| ||||| |  ||||||||||||| ||||| ||| ||||    
T  49413 taaattaacccacttaaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaa 49332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 9875314 - 9875241
Alignment:
Q  35 aaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaa 108  Q
    ||||||||||| |||||||||||||||||| |||| |  |||| ||||||||||||| || |||||||||||||    
T  9875314 aaactaaattagcctacttaaattgacatcagagagagccgaatctgagacctcaaggagaagcacactcttaa 9875241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 30127508 - 30127442
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||| ||||||| || |||| | |||||||||||||||||| |  ||||||||||||    
T  30127508 ctaaattaacctacctaaattggcaccggaaagaatcgaacctgagacctcgaagaggagcacactc 30127442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 32250812 - 32250866
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacc 86  Q
    ||||| ||||||||||| |||||||||| || |||||| ||||||||||||||||    
T  32250812 aagaagctaaattaacccacttaaattgtcaccggagagaatcgaacctgagacc 32250866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 12234469 - 12234541
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || |  ||||||||||  ||||| |||||||||||||||||| ||| |||||||||||    
T  12234469 aagaagctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactc 12234541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 33549218 - 33549146
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| |  || ||||||| |||| |||| |||||||||||||||||| || ||||||||||||    
T  33549218 aagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactc 33549146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 28841527 - 28841456
Alignment:
Q  33 agaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||| || |  |||||||||| |||||| |||||||| ||||||||  || ||||||||||||    
T  28841527 agaaactaaattagccaatctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactc 28841456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 346637 - 346572
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||| ||||||||||||||||  || || |||||||| ||||||||| || || |||||||||    
T  346637 taaattagcctacttaaattgacacgggtgagaatcgaacatgagacctcgaggagaagcacactc 346572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 6519138 - 6519187
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacct 87  Q
    ||||||||||| |||||||||| |  ||||||||||||||||| ||||||    
T  6519138 ctaaattaacccacttaaattggcgccggagataatcgaacctaagacct 6519187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 168074 - 168122
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacct 87  Q
    |||||||| | ||||||| ||| || |||||||||||||||||||||||    
T  168074 taaattaatccacttaaactgatattggagataatcgaacctgagacct 168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 12633123 - 12633051
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||  | |||||||||||||| ||||| |||||||| ||||| ||| |  ||||||||||||    
T  12633123 aagaagctaaattagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactc 12633051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 968476 - 968404
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||| ||||||||| |||||||||||||||||| || ||||||||||||    
T  968476 aagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactc 968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 31087227 - 31087276
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctc 88  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  31087227 taaattagcctatttaaattgacaccggagataatcgaacctgagacctc 31087276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 12281589 - 12281535
Alignment:
Q  51 cttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||||||||||||||||| ||||||| |||||||||| || ||| |||||||||    
T  12281589 cttaaattgacatcggagaaaatcgaatctgagacctcgaggaggggcacactct 12281535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 31408084 - 31408157
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| |||||||||||  |||||||||||||  |||| |||||||||||| ||||  || |||||||||||||    
T  31408084 aagaagctaaattaacccccttaaattgacattagagagaatcgaacctgaaaccttgaggaggagcacactct 31408157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 35690035 - 35690081
Alignment:
Q  41 aattaacctacttaaattgacatcggagataatcgaacctgagacct 87  Q
    ||||| |||||||||||||||| | |||| |||||||||||||||||    
T  35690035 aattagcctacttaaattgacaccagagagaatcgaacctgagacct 35690081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 11928715 - 11928764
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 103  Q
    |||||||||||||  | |||||||||||||||||| || |||||||||||    
T  11928715 aaattgacatcggtaagaatcgaacctgagacctcgaggaggagcacact 11928764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 40791857 - 40791926
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcaca 101  Q
    ||||| |||||||| || |||||||||||||   |||| |||||||||| |||| ||||| |||||||||    
T  40791857 aagaagctaaattagcccacttaaattgacactagagaaaatcgaacctaagacttcaaggaggagcaca 40791926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 6536634 - 6536562
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||||| || ||||||| || | |||| ||| |||||||||||||  || ||||||||||||    
T  6536634 aagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactc 6536562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 8485113 - 8485041
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||| || |||||| |||||||  |||||||||||  ||||||||||||    
T  8485113 aagaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactc 8485041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 11492035 - 11492107
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||  |||||||||  | ||| |||||||||| ||||||| |||||||||||||||    
T  11492035 aagaagctaaattagcccacccaaattgacactgaagagaatcgaacctaagacctcgagaaggagcacactc 11492107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 16893508 - 16893420
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    ||||| |||||||| || ||| ||||||||| |||||| |||||||||||||||||| || ||||| ||||||  ||||||||| ||||    
T  16893508 aagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaa 16893420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 2220086 - 2220015
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacact 103  Q
    |||||||||||||| || | |||||||||||| ||||| |||||||||||||||||| || || ||||||||    
T  2220086 aagaaactaaattagcccatttaaattgacattggagagaatcgaacctgagacctcgaggagaagcacact 2220015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 12587383 - 12587312
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||| || |||||| |||||||||||||||||| || ||||||||||||    
T  12587383 aagaagctaaattagcccacctaaattg-caccggagagaatcgaacctgagacctcgaggaggagcacactc 12587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 28283638 - 28283562
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    |||||||  |||| |||||||||| | |||| ||||||||||||||| ||||| | || |||||||| |||||||||    
T  28283638 taaattagactacataaattgacaccagagagaatcgaacctgagacatcaaggaagaacacactctcaaatctcaa 28283562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 18334984 - 18335039
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacct 87  Q
    ||||| |||||||||||||  |||||||||||||| || ||||||||| |||||||    
T  18334984 aagaagctaaattaacctaactaaattgacatcggggaaaatcgaacccgagacct 18335039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 40814376 - 40814455
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaac 117  Q
    |||||||| || |||||||||||||   |||| |||||||||||| |||||||| | |||||||||| | |||| |||||    
T  40814376 ctaaattagcccacttaaattgacactagagagaatcgaacctgaaacctcaaggatgagcacactcctgaatcccaaac 40814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 44961879 - 44961796
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    ||||| |||||||| || ||  |||||||||   |||| ||||||||||||||||   || |||||||||||||||||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaa 44961796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 52336758 - 52336808
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||| | ||||||||||||||||||| || ||| ||||||||||||    
T  52336758 aaattgacaccagagataatcgaacctgagatcttaaggaggagcacactc 52336808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 4566643 - 4566590
Alignment:
Q  51 cttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||| |||| ||||||||||||||||   || ||||||||||||    
T  4566643 cttaaattgacatcagagagaatcgaacctgagaccctgaggaggagcacactc 4566590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 23471047 - 23471100
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagac 85  Q
    ||||| |||||||| || ||| ||||||||| |||||| |||||||||||||||    
T  23471047 aagaagctaaattagccaactcaaattgacaccggagagaatcgaacctgagac 23471100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 51814586 - 51814525
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaa 115  Q
    |||||| || |||||| |||||||||||||||||  || ||||||||||||| | |||||||    
T  51814586 aaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaa 51814525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 9117194 - 9117162
Alignment:
Q  71 aatcgaacctgagacctcaagaaggagcacact 103  Q
    ||||||||||||||||||||| |||||||||||    
T  9117194 aatcgaacctgagacctcaaggaggagcacact 9117162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 9643778 - 9643826
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacct 87  Q
    |||||||||||||  ||||||||| |||||||||| ||| |||||||||    
T  9643778 taaattaacctacaaaaattgacaccggagataattgaatctgagacct 9643826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 16019429 - 16019385
Alignment:
Q  33 agaaactaaattaacctacttaaattgacatcggagataatcgaa 77  Q
    |||| |||||||| || ||||||||||||||| ||||||||||||    
T  16019429 agaagctaaattatcccacttaaattgacatctgagataatcgaa 16019385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 26232356 - 26232396
Alignment:
Q  65 ggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| ||| ||||||||||||||||| |||||||||||||    
T  26232356 ggagagaattgaacctgagacctcaaggaggagcacactct 26232396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 42949254 - 42949326
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || |||||||||| || |||||| |||| ||  ||||||||| || ||||||||||||    
T  42949254 aagaagctaaattagcccacttaaattgtcaccggagagaatcaaatatgagacctcgaggaggagcacactc 42949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 49262646 - 49262719
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    |||||||||||||| || || ||||||| ||  || || |||||||||||||||||||| ||||||||||||||    
T  49262646 aagaaactaaattagcccacctaaattggcactggggagaatcgaacctgagacctcaacaaggagcacactct 49262719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 32662861 - 32662801
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagca 99  Q
    ||||||| || ||||||||||||| || ||| ||||||||||||||||||||| |||||||    
T  32662861 taaattagcccacttaaattgacaccgaagaaaatcgaacctgagacctcaaggaggagca 32662801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 2184994 - 2185066
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||| |||||  || |||||| ||||||||| ||||||||||||||| |  |||||||||||||||    
T  2184994 aagaagctaaactaaccccctcaaattggcatcggagagaatcgaacctgagactttgagaaggagcacactc 2185066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 7949416 - 7949488
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || |||||||||| | |||| |||||||||||||||||  || ||||||||||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactc 7949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 30584784 - 30584836
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgaga 84  Q
    |||||||||||||| |  |  ||||||||||||||||||||||||||||||||    
T  30584784 aagaaactaaattagctcatctaaattgacatcggagataatcgaacctgaga 30584836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 30938181 - 30938253
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||| ||||| || ||||||| ||| || || |||||||||||||||||| || ||||||||||||    
T  30938181 aagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactc 30938253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 51954228 - 51954156
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||  ||||||||| ||||||||||| ||||||||||||| || ||||||| ||||    
T  51954228 aagaagctaaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactc 51954156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 13015535 - 13015469
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||| || |||||||||| | |||| |||||||| |||||| || || ||||||||||||    
T  13015535 ctaaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacactc 13015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 39509178 - 39509112
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||| || ||||||| ||  || || |||||||||||||||||| || ||||||||||||    
T  39509178 ctaaattaacccacctaaattgccactggggagaatcgaacctgagacctcgaggaggagcacactc 39509112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 49576878 - 49576928
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||| ||||| |||||||||||||||||  || ||||||||||||    
T  49576878 aaattgacattggagagaatcgaacctgagaccttgaggaggagcacactc 49576928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 18404845 - 18404898
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagac 85  Q
    ||||| ||||| ||||| ||||||||||||| |  |||||||||||||||||||    
T  18404845 aagaagctaaactaacccacttaaattgacaccttagataatcgaacctgagac 18404898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 47386753 - 47386826
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| |||||||| || || ||||||||||   |||| ||| |||||||||||||||||||| ||| ||||||    
T  47386753 aagaagctaaattagcccacctaaattgacactagagagaattgaacctgagacctcaagaagaagcgcactct 47386826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 21660106 - 21660178
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||  |||| ||||||||||   ||||||||||||| ||||||||| || | ||||||||||    
T  21660106 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactc 21660178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 21668870 - 21668942
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||  |||| ||||||||||   ||||||||||||| ||||||||| || | ||||||||||    
T  21668870 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactc 21668942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 24124037 - 24124089
Alignment:
Q  52 ttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||| || || |||||||||||||| |||||||||| |||| |||||||    
T  24124037 ttaaattggcaccgaagataatcgaacctcagacctcaaggaggaccacactc 24124089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 37109313 - 37109385
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||| |||||  || |||||| || | |||| |||||||||||||||||  || ||||||||||||    
T  37109313 aagaaactaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactc 37109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 38838911 - 38838839
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||| || ||  |||||| ||||||||| |||||||||| ||||||  || ||||||| ||||    
T  38838911 aagaaactaaattagcccaccgaaattgccatcggagagaatcgaacctaagaccttgaggaggagcatactc 38838839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 15285 - 15357
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||| |||| |||| |||||||||||||||||| || ||||||||||||    
T  15285 aagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactc 15357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 16773921 - 16773849
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||| |||| |||| |||||||||||||||||| || ||||||||||||    
T  16773921 aagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactc 16773849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 29173604 - 29173532
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || |||||||||| | ||||||||||||||||| ||||| || ||||||||||||    
T  29173604 aagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 22020824 - 22020896
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||| || || |||||| |||  ||||| ||||||| ||||||| ||||| ||||||||||||    
T  22020824 aagaaactaaattagcccacctaaattaacactggagagaatcgaatctgagacttcaaggaggagcacactc 22020896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 43442310 - 43442222
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    |||||||||||||| || |   ||||||||| | |||| |||||||||||||||||  || ||||||||||||  | ||||||||||||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaa 43442222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 12883948 - 12883882
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||| ||  ||||||| || ||||| ||| |||| |||||||||||| ||||||||||||    
T  12883948 ctaaattaacccaccaaaattgatattggagagaattgaacatgagacctcaaggaggagcacactc 12883882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 20495907 - 20495956
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctg 81  Q
    ||||| |||||| |||| ||| |||||||||||||||| |||||||||||    
T  20495907 aagaagctaaatcaacccactcaaattgacatcggagaaaatcgaacctg 20495956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 30000223 - 30000174
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctc 88  Q
    |||||||||| |||||||||| |||| |||| | ||||||||||||||||    
T  30000223 taaattaacccacttaaattggcatcagagagagtcgaacctgagacctc 30000174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 30109309 - 30109342
Alignment:
Q  71 aatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||||||||||||| ||||||||||||    
T  30109309 aatcgaacctgagacctcaaggaggagcacactc 30109342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 30700603 - 30700648
Alignment:
Q  55 aattgacatcggagataatcgaacctgagacctcaagaaggagcac 100  Q
    |||||||| | |||||||| ||||||||||||| ||||||||||||    
T  30700603 aattgacaccagagataattgaacctgagaccttaagaaggagcac 30700648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 10499071 - 10499143
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||  |||||||||||||||| ||||||||||||||||||||| | ||||| ||||    
T  10499071 aagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactc 10499143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 44743817 - 44743889
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||||| ||  |||||| ||  |||||||||||||||||||||||| || ||||||||||||    
T  44743817 aagaagctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactc 44743889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 51903840 - 51903912
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||| ||||||||| |||||| |||||||||||||||| | || ||||||||||||    
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactc 51903912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 19154745 - 19154672
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||||||||| ||||| ||  |||||||||||  ||| |||||||||||||||||  || |||||||||||||    
T  19154745 aagaaactaaactaacccacccaaattgacatcaaagagaatcgaacctgagacctttaggaggagcacactct 19154672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 47454579 - 47454651
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||| ||||| || ||||||| ||| || || |||||||||||||||||| || ||||||||||||    
T  47454579 aagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactc 47454651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 52769945 - 52770017
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || || ||||||||||    ||| ||||||||||||||||||||| ||||||||||||    
T  52769945 aagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactc 52770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 14186740 - 14186689
Alignment:
Q  53 taaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||| |||||| |||||||||||||||||  || ||||||||||||    
T  14186740 taaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactc 14186689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 2597223 - 2597261
Alignment:
Q  73 tcgaacctgagacctcaagaaggagcacactcttaaatc 111  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  2597223 tcgaacctgagacctcaaggaggagcacactcctaaatc 2597261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 30510167 - 30510233
Alignment:
Q  38 ctaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||| || ||||| |||||||   |||| |||||||||||||||||| |||||||||| ||||    
T  30510167 ctaaattagcccacttagattgacactagagagaatcgaacctgagacctcgagaaggagcatactc 30510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 11090127 - 11090196
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcaca 101  Q
    ||||| |||||||||||||||||||||||||   || | ||||||| || ||||||| || |||||||||    
T  11090127 aagaagctaaattaacctacttaaattgacactcgaaagaatcgaaactaagacctcgaggaggagcaca 11090196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 2667976 - 2667904
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||| || || || ||||||||||   ||||||||||||||||||||||| || | ||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactc 2667904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 4844473 - 4844545
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||  |||||| || |||||| |||||| ||||||||||| || ||||||||||||    
T  4844473 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactc 4844545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 4870169 - 4870241
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||  |||||| || |||||| |||||| ||||||||||| || ||||||||||||    
T  4870169 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactc 4870241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 10445101 - 10445173
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || ||| |||||  || | |||| |||||||||||||||||| || ||||||||||||    
T  10445101 aagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactc 10445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 10828695 - 10828767
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||||  |||||  || |||||| ||||  ||||||||||||||||||||| ||| ||||||| ||||    
T  10828695 aagaaactaacctaaccccctcaaattggcatcatagataatcgaacctgagaccttaagtaggagcatactc 10828767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 20501777 - 20501737
Alignment:
Q  65 ggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  20501777 ggagagaatcgaacctgagaccttaaggaggagcacactct 20501737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 32639059 - 32639003
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctc 88  Q
    ||||||| ||||||  | |||||||||||||  ||||| ||||||||||||||||||    
T  32639059 aagaaacaaaattaggccacttaaattgacactggagaaaatcgaacctgagacctc 32639003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 45308864 - 45308936
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||  | |||| ||||||||  | |||||||||||||||||||||| || ||||||| ||||    
T  45308864 aagaagctaaattagtccacttgaattgacactgaagataatcgaacctgagacctcgaggaggagcatactc 45308936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 49397503 - 49397575
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| ||||||||  | || ||||||||||||  |||||||||||| ||||||||| || || |||||||||    
T  49397503 aagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagacctcgaggagaagcacactc 49397575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 13030 - 13080
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||||||||||| |||||||||||||||||  || ||||||||||||    
T  13030 aaattgacatcggagagaatcgaacctgagaccttgaggaggagcacactc 13080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 25331 - 25381
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||||||| | ||||||||||||||||||||||  |||||||||||||||    
T  25331 aaattgacaccagagataatcgaacctgagaccttgagaaggagcacactc 25381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 41617 - 41683
Alignment:
Q  54 aaattgacatcggagataatcgaacctgagacctcaagaaggagcacactcttaaatctcaaaccaa 120  Q
    ||||||||||| |||| ||| |||||||||||||| || ||||||| ||||| | ||||||| ||||    
T  41617 aaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaa 41683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 380358 - 380308
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctga 82  Q
    |||||| ||||||| || ||| ||||||||||| |||||||||||||||||    
T  380358 aagaaattaaattagcccactcaaattgacatcagagataatcgaacctga 380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 45728 - 45793
Alignment:
Q  39 taaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||| ||||| || |||||||||| | |||| |||||||| |||||||||||| |||| |||||||    
T  45728 taaactaacccacctaaattgacaccagagagaatcgaacatgagacctcaaggaggaacacactc 45793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 8624 - 8676
Alignment:
Q  52 ttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    |||||||| || || |||||||||||||| |||||||||| |||| |||||||    
T  8624 ttaaattggcaccgaagataatcgaacctcagacctcaaggaggaccacactc 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 14927 - 14999
Alignment:
Q  32 aagaaactaaattaacctacttaaattgacatcggagataatcgaacctgagacctcaagaaggagcacactc 104  Q
    ||||| |||||||| || |||||||||| || |||||| |||| ||  ||||||||| || ||||||||||||    
T  14927 aagaagctaaattagcccacttaaattgtcaccggagagaatcaaatatgagacctcgaggaggagcacactc 14999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 162992 - 163044
Alignment:
Q  53 taaattgacatcggagataatcgaacctgagacctcaagaaggagcacactct 105  Q
    |||||||||| |||||| |||||||||| |||||| | | |||||||||||||    
T  162992 taaattgacaccggagagaatcgaacctcagaccttatggaggagcacactct 163044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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