View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_low_1 (Length: 638)
Name: NF3306_1D_low_1
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 2556596 - 2557142
Alignment:
| Q |
1 |
atttcactctacattattattcatattattatatcttgaacattagattacttcactcttgattggttttacatatcgtagttacatacgagttgaattt |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
2556596 |
atttcactcaacattattattcatattattatatcttgaacattagattatttcactcttgattggttttacatatcatagttacatacgagttgaaatt |
2556695 |
T |
|
| Q |
101 |
ttctaattaggatacatctgtgagggtgagttcggtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556696 |
ttttaattaggatacatctgtgagggtgagttcggtgacatatcgaggatttaccggaacttctgctagcaagatagctgttaatttaaattgtagctcc |
2556795 |
T |
|
| Q |
201 |
tctggttgtttcgacattctattggatcaaaataacattgtagctactcaagcaggaaaaatgacttcannnnnnngtagaaatgctcatggaacagtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2556796 |
tctggttgtttcgacattctattggatcaaaataacattgtagctactcaagcaggaaaaatgacttcatttttttgtagaaatgctcatggaacagtta |
2556895 |
T |
|
| Q |
301 |
gaaatacttttccaaatgtctcttgtctatctaattaatgttttattttattggcctccattatgcggagaaataaattgttaaataaacagtgtatcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2556896 |
gaaatacttttccaaatgtctcttgtctatctaattaatgttttattttattggcctccattatgcggagaaataaattgttaaataaacagtgtatcca |
2556995 |
T |
|
| Q |
401 |
ttaatcaagttgcaatgcaattcatgcagaaacttcattttttgcttcccttgtgacattccctatccaaatttttatttgaatatctgcatttcctaat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2556996 |
ttaatcaagttgcaatgcaattcatgcagaaacttcattttttgcttgccttgtgacattccctatccaaattttgatttgaatatctgcatttcctaat |
2557095 |
T |
|
| Q |
501 |
tttaattgaaagacaacataaacaaaaacgtttagaatatatacttg |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2557096 |
tttaattgaaagacaacataaacaaaaacgtttagaatatatacttg |
2557142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 107 - 508
Target Start/End: Original strand, 2566528 - 2566929
Alignment:
| Q |
107 |
ttaggatacatctgtgagggtgagttcggtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggt |
206 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2566528 |
ttaggatacatctgtgaaggtgagttctgtgacatatcgaggatttattggaacttctgctagcaagatagctgttaatttaaattgtagctcccctggt |
2566627 |
T |
|
| Q |
207 |
tgtttcgacattctattggatcaaaataacattgtagctactcaagcaggaaaaatgacttcannnnnnngtagaaatgctcatggaacagttagaaata |
306 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2566628 |
tgtttcaatattctattggatcaaaataacattgtagctactcaagcaggaaaaaagacttcatttttttgtagaaatgctcatggaacagttagaaata |
2566727 |
T |
|
| Q |
307 |
cttttccaaatgtctcttgtctatcta---attaatgttttattttattggcctccattatgcggagaaataaattgttaaataaacagtgtatccatta |
403 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||| ||||| |
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|
| T |
2566728 |
cttttccaaatgtctcttgcctatctagttaataatgttttattttattggcctccattatgtggagaaataaa--gctaaataaagagtgtat-catta |
2566824 |
T |
|
| Q |
404 |
atcaagttgcaatgcaattcatgcagaaacttcattttttgcttcccttgtgacattccctatccaaatttttatttgaatatctgcatttcctaatttt |
503 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||| ||||||| |
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|
| T |
2566825 |
atcaagttgcaatgcaattcttgcagaaacttcattttttgcttgccttatgacattccctatagaaatttggatttgaatatctgcatttcataatttt |
2566924 |
T |
|
| Q |
504 |
aattg |
508 |
Q |
| |
|
||||| |
|
|
| T |
2566925 |
aattg |
2566929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 135 - 342
Target Start/End: Original strand, 2551120 - 2551327
Alignment:
| Q |
135 |
gtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattggatcaaaata |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| | ||||| || ||||||| ||||| || ||||||||||| | |||||||| |||||||||| |
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|
| T |
2551120 |
gtgacatatcgaggatttaccggaacttcttatagtgatatagcaattgatttaaagtgtagttcttctggttgttttaagattctattagatcaaaata |
2551219 |
T |
|
| Q |
235 |
acattgtagctactcaagcaggaaaaatgacttcannnnnnngtagaaatgctcatggaacagttagaaatacttttccaaatgtctcttgtctatctaa |
334 |
Q |
| |
|
|||||||| || ||||| ||||||| | |||||| |||||||||||||||||| ||||||||||||| |||||| |||| |||| |||||||| |
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|
| T |
2551220 |
acattgtatctgctcaaccaggaaagaagacttcctctttttgtagaaatgctcatggaatagttagaaatactattccaattgtcccttgcctatctaa |
2551319 |
T |
|
| Q |
335 |
ttaatgtt |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
2551320 |
ttaatgtt |
2551327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 325
Target Start/End: Original strand, 2543637 - 2543837
Alignment:
| Q |
125 |
ggtgagttcggtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattg |
224 |
Q |
| |
|
||||||||| |||| || || ||||||||| ||||||||||||||| ||||| || | |||||||||||||| |||||||||| |||||| ||||| |
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|
| T |
2543637 |
ggtgagttcagtgaaatttcaaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctcttctggttgttatgacattttattg |
2543736 |
T |
|
| Q |
225 |
gatcaaaataacattgtagctactcaagcaggaaaaatgacttcannnnnnngtagaaatgctcatggaacagttagaaatacttttccaaatgtctctt |
324 |
Q |
| |
|
|| ||||| |||||||| || ||||| ||||||| | | |||| ||| |||||| |||||||| | |||||||||| ||||||||||| ||| |
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|
| T |
2543737 |
gaacaaaacaacattgtttctgctcaaccaggaaagaaggcttcttctttttgtacaaatgcccatggaactgctagaaatactgttccaaatgtccctt |
2543836 |
T |
|
| Q |
325 |
g |
325 |
Q |
| |
|
| |
|
|
| T |
2543837 |
g |
2543837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 2534193 - 2534309
Alignment:
| Q |
125 |
ggtgagttcggtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattg |
224 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||||||||||||||| ||||| || | |||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
2534193 |
ggtgagttcagtgaaatttcgaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctcttctggttgttatgacattttattg |
2534292 |
T |
|
| Q |
225 |
gatcaaaataacattgt |
241 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
2534293 |
gaacaaaacaacattgt |
2534309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 1831836 - 1831959
Alignment:
| Q |
135 |
gtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattggatcaaaata |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | ||||| || | ||||||||| |||| |||||||| | |||||| |||||||||||| | |
|
|
| T |
1831836 |
gtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctggttgaaccaacattcaattggatcaaaaca |
1831935 |
T |
|
| Q |
235 |
acattgtagctactcaagcaggaa |
258 |
Q |
| |
|
| ||||| || ||||| |||||| |
|
|
| T |
1831936 |
aaattgtctctgctcaaccaggaa |
1831959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 1866279 - 1866402
Alignment:
| Q |
135 |
gtgacatatcgaggatttactggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattggatcaaaata |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | ||||| || | ||||||||| |||| |||||||| | |||||| |||||||||||| | |
|
|
| T |
1866279 |
gtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctggttgaaccaacattcaattggatcaaaaca |
1866378 |
T |
|
| Q |
235 |
acattgtagctactcaagcaggaa |
258 |
Q |
| |
|
| ||||| || ||||| |||||| |
|
|
| T |
1866379 |
aaattgtctctgctcaaccaggaa |
1866402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 2546828 - 2546884
Alignment:
| Q |
203 |
tggttgtttcgacattctattggatcaaaataacattgtagctactcaagcaggaaa |
259 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| || ||||| ||||||| |
|
|
| T |
2546828 |
tggttgtttgaacattctattggatcaaaatgacattgtctcttctcaatcaggaaa |
2546884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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