View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_10 (Length: 349)
Name: NF3306_1D_low_10
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_10 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 37704454 - 37704780
Alignment:
| Q |
23 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
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| Q |
123 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
222 |
Q |
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| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
37704653 |
T |
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| Q |
223 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa |
322 |
Q |
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| T |
37704654 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa |
37704753 |
T |
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| Q |
323 |
aataacattaattgtatttagaatcgg |
349 |
Q |
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| T |
37704754 |
aataacattaattgtatttagaatcgg |
37704780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 37698974 - 37699283
Alignment:
| Q |
24 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
121 |
Q |
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|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
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| Q |
122 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
220 |
Q |
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| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
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| Q |
221 |
acgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatg |
317 |
Q |
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|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |
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| T |
37699174 |
actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatg |
37699273 |
T |
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| Q |
318 |
aagaaaataa |
327 |
Q |
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|||||||||| |
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| T |
37699274 |
aagaaaataa |
37699283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 37437520 - 37437823
Alignment:
| Q |
23 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
122 |
Q |
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||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
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| Q |
123 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca |
221 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||||| |
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| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- |
37437717 |
T |
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| Q |
222 |
cgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatga |
318 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
37437718 |
---aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatga |
37437814 |
T |
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| Q |
319 |
agaaaataa |
327 |
Q |
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| T |
37437815 |
agaaaataa |
37437823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 37698636 - 37698864
Alignment:
| Q |
23 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
122 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa |
37698718 |
T |
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| Q |
123 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta--- |
218 |
Q |
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|||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
37698719 |
ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt |
37698810 |
T |
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| Q |
219 |
-gcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
271 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37698811 |
agcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 151 - 327
Target Start/End: Complemental strand, 16841109 - 16840923
Alignment:
| Q |
151 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
249 |
Q |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
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| Q |
250 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaataa |
327 |
Q |
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| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataa |
16840923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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