View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_1D_low_11 (Length: 316)

Name: NF3306_1D_low_11
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_1D_low_11
NF3306_1D_low_11
[»] chr5 (4 HSPs)
chr5 (18-314)||(37705163-37705459)
chr5 (63-265)||(37437914-37438116)
chr5 (65-172)||(37700646-37700753)
chr5 (267-313)||(1629683-1629729)
[»] chr4 (1 HSPs)
chr4 (73-246)||(16840622-16840796)
[»] chr2 (2 HSPs)
chr2 (181-248)||(8265959-8266027)
chr2 (269-314)||(45385838-45385883)
[»] chr7 (2 HSPs)
chr7 (181-216)||(21595127-21595162)
chr7 (267-316)||(32804687-32804736)
[»] scaffold0591 (1 HSPs)
scaffold0591 (267-316)||(3954-4003)
[»] chr3 (1 HSPs)
chr3 (269-313)||(33291632-33291676)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 37705459 - 37705163
Alignment:
Q  18 acatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  37705459 acatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatgaaccaattataaaggtggtctaccgtagaacccacgagttgagtat 37705360  T
Q  118 cgatatccgatgacatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatt 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37705359 cgatatccgatggcatctgatactttttctttttatatgctcaatgcattttcttttgtgctgtaacaaactttgaagaaattataaatttaaagaaatt 37705260  T
Q  218 tttgtagattagttaagaaccatacaaaaaacacgtacataaaataaatgttaaattacaccataagtcttttaagttatttagttgtaagaaattg 314  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705259 tttgtagtttagttaagaaccatacaaaaaacacgtacataaaataaatgttaaattacaccataagtcttttaagttatttagttgtaagaaattg 37705163  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 37438116 - 37437914
Alignment:
Q  63 tccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaat 162  Q
    |||||||||||||  ||||||||||||| ||| ||||||||||  |||||||||||||||||  ||||||  | |||||||||||||||||||||||| |    
T  37438116 tccatgatgaaccgcttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagt 37438017  T
Q  163 gcattttcttttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagattagttaagaaccatacaaaaaacacgtacataaaat 262  Q
    |||||||||| |||||| ||| || ||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |   |||||||||    
T  37438016 gcattttcttatgtgctataataagctttgaggaaattataaatttaaagaaatttttgtagtttagttaagaaccatagaaaaaaaaaacacataaaat 37437917  T
Q  263 aaa 265  Q
    |||    
T  37437916 aaa 37437914  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 37700753 - 37700646
Alignment:
Q  65 catgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgc 164  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||  | |||  |||||||||||| |||||| |||    
T  37700753 catgatgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgc 37700654  T
Q  165 attttctt 172  Q
    ||||||||    
T  37700653 attttctt 37700646  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 1629683 - 1629729
Alignment:
Q  267 gttaaattacaccataagtcttttaagttatttagttgtaagaaatt 313  Q
    |||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  1629683 gttaaattacaccaaaagtcctttaagttatttaattgtaataaatt 1629729  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 16840622 - 16840796
Alignment:
Q  73 accaattataaaggtggtctaccgtagaactcacgagtagagtatcga-tatccgatgacatctgatactttttctttttatatgctcaatgcattttct 171  Q
    |||| ||||||| ||||| |||  |||||||||||||||||||||| | ||||  ||||||  | |||||||||||||||||||||| | | ||||||||    
T  16840622 accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct 16840721  T
Q  172 tttgtgctgtaacaaactttgaaaaaattataaatttaaagaaatttttgtagattagttaagaaccatacaaaa 246  Q
    | | || | |||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||| ||| ||||    
T  16840722 tatttgttataacaaactttgaataaattatagatttaaagaaatttttgtagtttagttaaaaactataaaaaa 16840796  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 8265959 - 8266027
Alignment:
Q  181 taacaaactttgaaaaaattataaatttaaagaaatt-tttgtagattagttaagaaccatacaaaaaa 248  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||||| | ||||||||| ||||| |||||    
T  8265959 taacaaaatttgagaaaattataaatttaaagaaattgtatgtagttaagttaagaatcatacgaaaaa 8266027  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 45385838 - 45385883
Alignment:
Q  269 taaattacaccataagtcttttaagttatttagttgtaagaaattg 314  Q
    |||||||||||||| ||| ||||||||||||| |||||| ||||||    
T  45385838 taaattacaccataggtcctttaagttatttaattgtaacaaattg 45385883  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 21595127 - 21595162
Alignment:
Q  181 taacaaactttgaaaaaattataaatttaaagaaat 216  Q
    |||||||||||||||||||||| |||||||||||||    
T  21595127 taacaaactttgaaaaaattatgaatttaaagaaat 21595162  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 32804736 - 32804687
Alignment:
Q  267 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgat 316  Q
    |||||||||||||| |||||||||| | |||||| |||||| ||||||||    
T  32804736 gttaaattacaccacaagtcttttaggatatttaattgtaataaattgat 32804687  T

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Target: scaffold0591 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 4003 - 3954
Alignment:
Q  267 gttaaattacaccataagtcttttaagttatttagttgtaagaaattgat 316  Q
    |||||||||||||| ||||| |||| |||||||| |||||| ||||||||    
T  4003 gttaaattacaccagaagtcatttatgttatttaattgtaataaattgat 3954  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 33291676 - 33291632
Alignment:
Q  269 taaattacaccataagtcttttaagttatttagttgtaagaaatt 313  Q
    ||||||||| |||||||| ||||||||||||| |||||| |||||    
T  33291676 taaattacaacataagtcctttaagttatttaattgtaacaaatt 33291632  T

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