View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_12 (Length: 309)
Name: NF3306_1D_low_12
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 86 - 300
Target Start/End: Original strand, 8043853 - 8044067
Alignment:
| Q |
86 |
ttttttgtgtgtggaagattcaatgaaggaaattgcttctataatatagatgcttgattgatgtacaacaca--gaaactatgaaaaaggatgagaaaaa |
183 |
Q |
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| T |
8043853 |
ttttttgtgtgtggaagatttaatgaaggaaattgcttctataata--gatgcttgattgatgtacaacacatagaaactatgaaaaaggatgagaaaaa |
8043950 |
T |
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| Q |
184 |
ttaaactgcagatgcataatatgagttaggttttataattttgttatgattcaaaatttataaaatgagacagtgacattatatgggtggtgaaatcctt |
283 |
Q |
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| T |
8043951 |
ttaaactacagatacataatatgagttaggttttataattttgttatgattcaaaatttataaaatgagacagtgacattatataggtggtgaaatcctt |
8044050 |
T |
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| Q |
284 |
gtatctagaggtagggc |
300 |
Q |
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| T |
8044051 |
gtatctataggtagggc |
8044067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 8043733 - 8043819
Alignment:
| Q |
25 |
tgtacatatttgagtttcaatggaagaacaaaatgaaggaaattgtttctattcaatgatattttttgtgtgtggaagattcaatga |
111 |
Q |
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| T |
8043733 |
tgtacatatttgagtttcaatggtagaacaaaatgaaggaaattgtttctattcaatgatattttttgtgtgtggaagattcaatga |
8043819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 7969746 - 7969700
Alignment:
| Q |
247 |
aatgagacagtgacattatatgggtggtgaaatccttgtatctagag |
293 |
Q |
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| T |
7969746 |
aatgagaccatgacattatataggtggtgaaatccttgtatccagag |
7969700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 41380460 - 41380375
Alignment:
| Q |
25 |
tgtacatatttgagtttcaatggaagaacaaaatgaaggaaattgtttctattcaatgatattttttgtgtgtggaagattcaatga |
111 |
Q |
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| T |
41380460 |
tgtacataattgagtttcaattgaagaacaaa-tgaaggaaattgcttgtattcaatgatattttttgtgtgtggaagattcaatga |
41380375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 41380297 - 41380199
Alignment:
| Q |
131 |
atagatgcttgattgatgtacaacac--agaaactatgaaaaaggatgagaaaaattaaactgcagatgcataatatgagttaggttttataattttgtt |
228 |
Q |
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| T |
41380297 |
atagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatggatgagaaaa-ttaaactacagatacattatatgagctaggttttgtaattttgtt |
41380199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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