View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_1D_low_13 (Length: 303)

Name: NF3306_1D_low_13
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_1D_low_13
NF3306_1D_low_13
[»] chr3 (26 HSPs)
chr3 (5-299)||(1889228-1889522)
chr3 (5-299)||(1897307-1897601)
chr3 (5-299)||(1906753-1907047)
chr3 (4-299)||(2932038-2932327)
chr3 (11-229)||(1890764-1890982)
chr3 (45-280)||(1940240-1940469)
chr3 (38-158)||(1930946-1931066)
chr3 (115-174)||(1936741-1936800)
chr3 (115-232)||(997807-997924)
chr3 (115-269)||(1022702-1022850)
chr3 (115-182)||(1014197-1014264)
chr3 (118-174)||(2696457-2696513)
chr3 (118-182)||(4141893-4141957)
chr3 (118-162)||(12218279-12218323)
chr3 (231-269)||(1027820-1027858)
chr3 (118-164)||(2442267-2442312)
chr3 (117-149)||(783591-783623)
chr3 (115-269)||(1007674-1007822)
chr3 (119-179)||(7431810-7431870)
chr3 (117-149)||(43992211-43992243)
chr3 (124-179)||(3754840-3754895)
chr3 (123-162)||(7427360-7427399)
chr3 (120-182)||(671069-671131)
chr3 (117-147)||(13526847-13526877)
chr3 (119-152)||(956622-956655)
chr3 (117-149)||(1438236-1438268)
[»] chr4 (3 HSPs)
chr4 (115-176)||(22671898-22671959)
chr4 (112-158)||(20019546-20019592)
chr4 (117-179)||(27471348-27471410)
[»] chr5 (9 HSPs)
chr5 (115-172)||(23769409-23769466)
chr5 (115-172)||(23819257-23819314)
chr5 (115-181)||(23644658-23644724)
chr5 (115-181)||(23813850-23813916)
chr5 (115-232)||(23732394-23732511)
chr5 (115-159)||(23766650-23766694)
chr5 (115-159)||(23816498-23816542)
chr5 (118-179)||(2066832-2066893)
chr5 (120-168)||(1427460-1427508)
[»] chr8 (1 HSPs)
chr8 (115-182)||(19728109-19728176)
[»] chr6 (2 HSPs)
chr6 (117-159)||(9819605-9819647)
chr6 (118-159)||(9825291-9825332)
[»] scaffold0044 (1 HSPs)
scaffold0044 (119-163)||(89396-89440)
[»] chr7 (1 HSPs)
chr7 (120-182)||(1077922-1077984)
[»] chr2 (2 HSPs)
chr2 (119-181)||(33038445-33038507)
chr2 (121-157)||(7168468-7168504)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 1889522 - 1889228
Alignment:
Q  5 gtttggtgttggattgtatttatgaaaaggaacggacacagaagttggtttttcacaattctagaaatggcacttttaagtttagtaagtcgaaaatcat 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  1889522 gtttgttgttggattgtatttatgaaaaggaacggacacagaagttggtttttcacaattctagaaatgacacttttaagtttagtgagtcgaaaatcat 1889423  T
Q  105 gcgttacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1889422 gcgttacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctt 1889323  T
Q  205 tatgtcaatttttgtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1889322 tatgtcaatttttgtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 1889228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 1897601 - 1897307
Alignment:
Q  5 gtttggtgttggattgtatttatgaaaaggaacggacacagaagttggtttttcacaattctagaaatggcacttttaagtttagtaagtcgaaaatcat 104  Q
    ||||| ||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1897601 gtttgttgttggattgtatttatgaaggggaaaggacacggaagttggtttttcacaattctagaaatggcacttttaagtttagtgagtcgaaaatcat 1897502  T
Q  105 gcgttacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctt 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  1897501 gcgtgacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtaaatgtggtgctatgtaacttgagtgtgagactaatctaaaacctt 1897402  T
Q  205 tatgtcaatttttgtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 299  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  1897401 tatgtcaatttctgtttaggatatttttatttattttgtagttgttctgattattggttacttgatggattattgttaaggttcatttgaatatg 1897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 1907047 - 1906753
Alignment:
Q  5 gtttggtgttggattgtatttatgaaaaggaacggacacagaagttggtttttcacaattctagaaatggcacttttaagtttagtaagtcgaaaatcat 104  Q
    ||||| ||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1907047 gtttgttgttggattgtatttatgaaggggaaaggacacggaagttggtttttcacaattctagaaatggcacttttaagtttagtgagtcgaaaatcat 1906948  T
Q  105 gcgttacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctt 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  1906947 gcgtgacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtaaatgtggtgctatgtaacttgagtgtgagactaatctaaaacctt 1906848  T
Q  205 tatgtcaatttttgtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 299  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  1906847 tatgtcaatttctgtttaggatatttttatttattttgtagttgttctgattattggttacttgatggattattgttaaggttcatttgaatatg 1906753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 2932038 - 2932327
Alignment:
Q  4 agtttggtgttggattgtatttatgaaaaggaacggacacagaagttggtttttcacaattctagaaatggcacttttaagtttagtaagtcgaaaatca 103  Q
    |||||| ||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2932038 agtttgttgttggattgtatttatgaaggggaaaggacacggaagttggtttttcacaattctagaaatggcacttttaagtttagtgagtcgaaaatca 2932137  T
Q  104 tgcgttacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacct 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||    
T  2932138 tgcgtgacgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgcagatgtggggctatatcacttgagagtgagactaaactaaaacct 2932237  T
Q  204 ttatgtcaatttttgtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 299  Q
    |||||||||||| | ||||||      ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2932238 ttatgtcaatttctatttagg------atatttattttgtacttgttctgatgattggttacttcatggattattgttaaggttcatttgaatatg 2932327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 1890982 - 1890764
Alignment:
Q  11 tgttggattgtatttatgaaaaggaacggacacagaagttggtttttcacaattctagaaatggcacttttaagtttagtaagtcgaaaatcatgcgtta 110  Q
    ||||||||| ||||| |  | ||||| | ||| |||||||||||||| |||||||||||||||| |||  |||||||||| || |||||||||||| | |    
T  1890982 tgttggattctatttctacagaggaatgtacaaagaagttggttttttacaattctagaaatggtactactaagtttagtgagccgaaaatcatgcatga 1890883  T
Q  111 cgtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtc 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||| ||    
T  1890882 cgtatgcgttgagagtttgatatcgccttgttcttaatgctagaatgtagatgtggtactatgtcacttgagagtgagattaaactaaaacctatatttc 1890783  T
Q  211 aatttttgtttaggatatt 229  Q
    ||||| ||||| |||||||    
T  1890782 aatttctgttttggatatt 1890764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 1940469 - 1940240
Alignment:
Q  45 gaagttggtttttcacaattctagaaatggcacttttaagtttagtaag-tcgaaaatcatgcgttacgtatgcgttgagagtttgatatcaccttgttc 143  Q
    ||||||| | ||| |||||||||||||||| ||||||||||||| |||| | ||||| ||||  | | |||||| |||||||||||||||||||||||||    
T  1940469 gaagttgatgttttacaattctagaaatggtacttttaagtttactaaggttgaaaa-catgtttgaggtatgcattgagagtttgatatcaccttgttc 1940371  T
Q  144 ttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaatttttgtttaggatatttatatttattttgt 243  Q
    ||| ||||| |||||||| ||||| |||| |||| ||||| ||||||||| ||| |   | ||||| ||||| ||||||      |  ||||| |||| |    
T  1940370 ttagtgctataatgtagacgtggttctatatcacatgagaatgagactaaactagactttatatgttaatttctgttta------tggtatttgtttttt 1940277  T
Q  244 acttgttctgattattggttacttcagggattattgt 280  Q
    | |||||||||||||||||||||||| |||| |||||    
T  1940276 atttgttctgattattggttacttcatggatcattgt 1940240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 1931066 - 1930946
Alignment:
Q  38 ggacacagaagttggtttttcacaattctagaaatggcacttttaagtttagtaagt-cgaaaatcatgcgttacgtatgcgttgagagtttgatatcac 136  Q
    |||||| ||||||| ||||| |||||||||||||||| |||| ||||| || ||||| || | | || | || | ||||| |||||||||||||||||||    
T  1931066 ggacacggaagttgattttttacaattctagaaatggtacttataagtctactaagtacgtata-cacgtgtgatgtatgtgttgagagtttgatatcac 1930968  T
Q  137 cttgttcttaatgctagaatgt 158  Q
    ||||||||||||||||||||||    
T  1930967 cttgttcttaatgctagaatgt 1930946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 1936800 - 1936741
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgt 174  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  1936800 tgcgttgagagtttgatatcaccttgtttttaatgctagaatgtagaagtggttctatgt 1936741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 997807 - 997924
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaatt 214  Q
    |||||||||||||| ||||| | || ||||||||||||| |||| |||| ||||||||||||||||||  ||| | | | ||| | ||| ||||| ||||    
T  997807 tgcgttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgagtatgatatttaactagagcctatatgttaatt 997906  T
Q  215 tttgtttaggatatttat 232  Q
    | |||||| |||||||||    
T  997907 tatgtttatgatatttat 997924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 1022702 - 1022850
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgaga-ctaatctaaaacctttatgtcaat 213  Q
    |||||||||||||| ||||| |||||| |||||||||||  |||||||| ||||||||||| ||||||  ||| | |||| ||  ||||| ||||| |||    
T  1022702 tgcgttgagagtttaatatcgccttgtccttaatgctagtttgtagatgaggtgctatgtcccttgagcatgaaatctaa-ctggaacctatatgttaat 1022800  T
Q  214 ttttgtttaggatatttatatttattttgtacttgttctgattattggttacttca 269  Q
    ||  |||||      | |||||||||||| ||||||||||||||||| ||||||||    
T  1022801 ttacgttta------tgatatttattttgaacttgttctgattattgattacttca 1022850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 1014197 - 1014264
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 182  Q
    |||||||||||||| ||||| | || ||||||||||||| |||| |||| ||||||||||||||||||    
T  1014197 tgcgttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgag 1014264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 2696513 - 2696457
Alignment:
Q  118 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgt 174  Q
    |||||||||||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  2696513 gttgagagtttgttatcaccttggtcttaatgctaaaatatagatgtggtgttatgt 2696457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 4141957 - 4141893
Alignment:
Q  118 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 182  Q
    ||||| ||||| ||||||||| |||||  |||||||||| ||||||| |||||||||||||||||    
T  4141957 gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag 4141893  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 12218279 - 12218323
Alignment:
Q  118 gttgagagtttgatatcaccttgttcttaatgctagaatgtagat 162  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||    
T  12218279 gttgagagtttgatatcaccttgttcttaatgttaggatgtagat 12218323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 1027820 - 1027858
Alignment:
Q  231 atatttattttgtacttgttctgattattggttacttca 269  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  1027820 atatttattttgtacttgttctcattattggttacttca 1027858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 2442267 - 2442312
Alignment:
Q  118 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgt 164  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  2442267 gttgagagtttaatatcaccttgttcttaatgctag-atgtagatgt 2442312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 783623 - 783591
Alignment:
Q  117 cgttgagagtttgatatcaccttgttcttaatg 149  Q
    |||||||||||||||||||||||||||||||||    
T  783623 cgttgagagtttgatatcaccttgttcttaatg 783591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 1007674 - 1007822
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgaga-ctaatctaaaacctttatgtcaat 213  Q
    |||||||||||||| ||||| |||| |||||||||||||  |||||||  |||||||||||  |||||  ||| | |||| ||  ||||| ||||| |||    
T  1007674 tgcgttgagagtttaatatcgccttattcttaatgctagtttgtagataaggtgctatgtcctttgagcatgaaatctaa-ctggaacctatatgttaat 1007772  T
Q  214 ttttgtttaggatatttatatttattttgtacttgttctgattattggttacttca 269  Q
    ||  ||||| |||||      |||||||| ||||||||||||||||| ||||||||    
T  1007773 ttacgtttatgatat------ttattttgaacttgttctgattattgattacttca 1007822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 7431870 - 7431810
Alignment:
Q  119 ttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 179  Q
    |||||||||||||||| |||||||||||  ||||| |||||||||  ||||||| ||||||    
T  7431870 ttgagagtttgatatctccttgttcttaccgctaggatgtagatgctgtgctatatcactt 7431810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 43992211 - 43992243
Alignment:
Q  117 cgttgagagtttgatatcaccttgttcttaatg 149  Q
    |||||||||||||||||||||||||||||||||    
T  43992211 cgttgagagtttgatatcaccttgttcttaatg 43992243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 3754840 - 3754895
Alignment:
Q  124 agtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 179  Q
    ||||| |||||||| | ||||  ||||||| |||||||||||||||||||||||||    
T  3754840 agtttaatatcaccatcttctctatgctaggatgtagatgtggtgctatgtcactt 3754895  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 7427399 - 7427360
Alignment:
Q  123 gagtttgatatcaccttgttcttaatgctagaatgtagat 162  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  7427399 gagtttgatatcaccttgttcttaatgttaggatgtagat 7427360  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 671131 - 671069
Alignment:
Q  120 tgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 182  Q
    ||||||||| ||||  ||||| |||||||||||| || ||||||  |||||||||||||||||    
T  671131 tgagagtttaatattgccttggtcttaatgctaggatttagatgcagtgctatgtcacttgag 671069  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 13526847 - 13526877
Alignment:
Q  117 cgttgagagtttgatatcaccttgttcttaa 147  Q
    |||||||||||||||||||||||||||||||    
T  13526847 cgttgagagtttgatatcaccttgttcttaa 13526877  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 956622 - 956655
Alignment:
Q  119 ttgagagtttgatatcaccttgttcttaatgcta 152  Q
    |||| |||||||||||||||||||||||||||||    
T  956622 ttgaaagtttgatatcaccttgttcttaatgcta 956655  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 1438236 - 1438268
Alignment:
Q  117 cgttgagagtttgatatcaccttgttcttaatg 149  Q
    |||||||||||||||||||||||||| ||||||    
T  1438236 cgttgagagtttgatatcaccttgtttttaatg 1438268  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 22671959 - 22671898
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtca 176  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  22671959 tgcgttgagagtttaatatcaccttgttcttagtgctagtatgtagatgaggtgctatgtca 22671898  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 20019592 - 20019546
Alignment:
Q  112 gtatgcgttgagagtttgatatcaccttgttcttaatgctagaatgt 158  Q
    ||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  20019592 gtatgtgttgagagtttgatatcaccttgtttttaatgctaggatgt 20019546  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 27471410 - 27471348
Alignment:
Q  117 cgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 179  Q
    ||||||||||||| ||||||||||||  |||||  || |||||||||||||||||||| ||||    
T  27471410 cgttgagagtttggtatcaccttgtttctaatgtaaggatgtagatgtggtgctatgtgactt 27471348  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 23769466 - 23769409
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctat 172  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  23769466 tgcgttgaaagtttgatatcaccttgttcttaatgttagaatgtagttgtgatgctat 23769409  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 23819314 - 23819257
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctat 172  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  23819314 tgcgttgaaagtttgatatcaccttgttcttaatgttagaatgtagttgtgatgctat 23819257  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 23644658 - 23644724
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttga 181  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||  ||| |||||| || |||||    
T  23644658 tgcgttgaaagtttgatatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttga 23644724  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 23813916 - 23813850
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttga 181  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||  ||| |||||| || |||||    
T  23813916 tgcgtcgaaagtttgatatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttga 23813850  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 23732394 - 23732511
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaatt 214  Q
    |||||||| |||||||||| ||||||||||||||| |||||||| |  ||| |||||| || |||||   ||||| | | |||||| || ||| | ||||    
T  23732394 tgcgttgaaagtttgatattaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatt 23732493  T
Q  215 tttgtttaggatatttat 232  Q
    | |||||| |||||||||    
T  23732494 tatgtttatgatatttat 23732511  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 23766694 - 23766650
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgta 159  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||    
T  23766694 tgcgttgagagcttgatatcaccttgttcttaatgttaaaatgta 23766650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 23816542 - 23816498
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgta 159  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||    
T  23816542 tgcgttgagagcttgatatcaccttgttcttaatgttaaaatgta 23816498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 2066893 - 2066832
Alignment:
Q  118 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 179  Q
    |||||||||||||||||| |||||| |||||    ||| ||||||||||||||| |||||||    
T  2066893 gttgagagtttgatatcatcttgtttttaatatctgaacgtagatgtggtgctacgtcactt 2066832  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 1427508 - 1427460
Alignment:
Q  120 tgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtg 168  Q
    ||||||||| ||||||||||||||||| || ||  ||||||||||||||    
T  1427508 tgagagtttaatatcaccttgttcttattgttaagatgtagatgtggtg 1427460  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 19728109 - 19728176
Alignment:
Q  115 tgcgttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 182  Q
    |||||||||||||||||||||||||||   |||||| |  || |||||||||||||||||||| ||||    
T  19728109 tgcgttgagagtttgatatcaccttgtctgtaatgcaaagatttagatgtggtgctatgtcacctgag 19728176  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 9819647 - 9819605
Alignment:
Q  117 cgttgagagtttgatatcaccttgttcttaatgctagaatgta 159  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  9819647 cgttgagagtttgatatcaccttgttcttaatgttagtatgta 9819605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 9825332 - 9825291
Alignment:
Q  118 gttgagagtttgatatcaccttgttcttaatgctagaatgta 159  Q
    ||||||||||||||||| |||||||||||||| ||| |||||    
T  9825332 gttgagagtttgatatcgccttgttcttaatgttagtatgta 9825291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 89396 - 89440
Alignment:
Q  119 ttgagagtttgatatcaccttgttcttaatgctagaatgtagatg 163  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||    
T  89396 ttgagagtttgatatcaccttgttcttaacgttaggatgtagatg 89440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 1077984 - 1077922
Alignment:
Q  120 tgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 182  Q
    ||||||||| |||||||| ||||||||||| |||  ||||||| | ||||||| |||||||||    
T  1077984 tgagagtttaatatcaccatgttcttaatgttaggttgtagatctagtgctatatcacttgag 1077922  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 33038445 - 33038507
Alignment:
Q  119 ttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttga 181  Q
    |||| ||| |||||||||||||||||||||| ||| |||||||||   || ||||||||||||    
T  33038445 ttgaaagtctgatatcaccttgttcttaatgttaggatgtagatgctatgatatgtcacttga 33038507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 7168504 - 7168468
Alignment:
Q  121 gagagtttgatatcaccttgttcttaatgctagaatg 157  Q
    ||||||||||||||||||||||||||| | |||||||    
T  7168504 gagagtttgatatcaccttgttcttaacggtagaatg 7168468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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