View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_14 (Length: 299)
Name: NF3306_1D_low_14
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 48816093 - 48816358
Alignment:
| Q |
34 |
attagacattcaaataaaatgtgaagtttgtcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattcgtgagcctcgacc |
133 |
Q |
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| T |
48816093 |
attagacattcaaataaaatgtgaattttgtcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattcgtgagcctcgacc |
48816192 |
T |
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| Q |
134 |
tcgttagcaaacaatcatgacaaactctccaaatgaagttcttcactttgggagggactttatgcttccaaacgttgttccatacaccgacttatgaaga |
233 |
Q |
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| T |
48816193 |
tcgttagcaaacaatcacgacaaactctccaaatgaaattcttcactttaggagggattttatgcttccaaacgttgttccatacaccaacttatgaaga |
48816292 |
T |
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| Q |
234 |
ttgatgttgtatgcaatagtatccaaacaaagtttatatgcattccgcactgaatatttcccatat |
299 |
Q |
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| T |
48816293 |
ttgatgttgtatgcaatagtatccaaacaaaatttatatgcattccgcactgaatatttcccatat |
48816358 |
T |
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 297
Target Start/End: Complemental strand, 21623231 - 21622973
Alignment:
| Q |
40 |
cattcaaataaaatgtgaagtttgtcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattcgtgagcctcgacctcgtta |
139 |
Q |
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||||||||||||||||||| || ||||||||||||||| |||||| | ||||| |||||| ||||||||||||||||| |||||||| | || ||| |
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| T |
21623231 |
cattcaaataaaatgtgaatttcgtcctcgtagttgtgattgcaaacaacacatgtagtcgaacaatttatacctctatatgtgagccttgcccatgttg |
21623132 |
T |
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| Q |
140 |
gcaaacaatcatgacaaactctccaaatgaagttcttcactttgggagggactttatgcttccaaacgttgttccatacac-cgacttatgaagattgat |
238 |
Q |
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| T |
21623131 |
gcagacaattacgacatactctccaaacgaagttattcacttttgaagggacttcaagcttccaaatttcgttccatccactcggcttatgaagatggga |
21623032 |
T |
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| Q |
239 |
gttgtatgcaatagtatccaaacaaagtttatatgcattccgcactgaatatttcccat |
297 |
Q |
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| T |
21623031 |
gttatctacaatagtattaacacaaagtctatatgaactccgcactaaatattgcccat |
21622973 |
T |
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