View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_low_16 (Length: 286)
Name: NF3306_1D_low_16
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 25056378 - 25056657
Alignment:
| Q |
1 |
tttggtggcttaatttgaaccaaatttgaccgggggaggggcatatagatgtcaggtggttggaggataatattattaagaaggttgggatggaaagtcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25056378 |
tttggtggcttaatttgaaccaaattcgaccgggggaggggcatatagatgtcaggtggttggaggataatattattaggaaggttgggatggaaagtcc |
25056477 |
T |
|
| Q |
101 |
actttgttttgggagggtccgtggcttgatgatgttcctttagctagg--ttttcgtaggctgtttgagttagcggagaataagcaagccacactggagg |
198 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25056478 |
actttattttgggaggatccgtggcttgatgacgttcctttagctaggtctttttgtaggctgtttgagttagcggagaataagcaagccacagtggagg |
25056577 |
T |
|
| Q |
199 |
aaatatttttgatggggtgggaggttgatggagaggggtggaagtggaggtggaggttgcatgcgagggaggaagggtag |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25056578 |
aaatatttttgatggggtgggaggttgatggagaggggtagaagtggaggtggaggttgcatgcgagggaggaagggtag |
25056657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 49868933 - 49869091
Alignment:
| Q |
100 |
cactttgttttgggagggtccgtggcttgatgatgttcctttagctaggt--tttcgtaggctgtttgagttagcggagaataagcaagccacactggag |
197 |
Q |
| |
|
|||||| |||||||||| || |||||||||||| ||| | |||||| | ||| ||||| ||||||||||||| || ||||||| || |||| ||||| |
|
|
| T |
49868933 |
cactttattttgggaggatctgtggcttgatgacattctgtaagctagttcttttagtaggttgtttgagttagcagaaaataagctagtcacaatggag |
49869032 |
T |
|
| Q |
198 |
gaaatatttttgatggggtgggaggttgatggagaggggtggaagtggaggtggaggtt |
256 |
Q |
| |
|
||||| |||||| |||||| |||||||||||| || ||| |||||| || ||||||| |
|
|
| T |
49869033 |
gaaatgtttttgtgagggtggcaggttgatggagtggcgtgaaagtggtggcggaggtt |
49869091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University