View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_2 (Length: 606)
Name: NF3306_1D_low_2
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_2 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 24 - 606
Target Start/End: Original strand, 2555344 - 2555922
Alignment:
| Q |
24 |
caacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaattctatgataagatccggtaagtaaagtttatatattatgatcattatt |
123 |
Q |
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| T |
2555344 |
caacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaattctatgataagatccggtaagtaaagtttatat--tatgatcattatt |
2555441 |
T |
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| Q |
124 |
ttataagtgtcgtatagaaattgatatgaaaaatgtgaaaaagttaattnnnnnnnntaaattttgactaaacatttttgtacaagtaaatgcaaaacac |
223 |
Q |
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| T |
2555442 |
ttataagtgtcgtatagaaattgatatgaaaaacgtgaaaaagttaattaaaataaataaattttgactaaacatttttgtataagtaaatgcaaaacac |
2555541 |
T |
|
| Q |
224 |
tatttttatagctaaggactttatccttaaaatatttaacatttgtggaaatttaacttgagnnnnnnncttttaataaataggtgatgattgtattgcg |
323 |
Q |
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| T |
2555542 |
tatttttatagctaaggtctttatccttaaaatgtttaacatttgtggaaatttaacttgagtttttttcttttaataaataggtgatgattgtattgcg |
2555641 |
T |
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| Q |
324 |
cttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaaaattgcatctctaatgtacaatttca |
423 |
Q |
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| T |
2555642 |
cttaatagtggctccttttttattaatgttactcgggttacttgcggaccaggccatggaataaggttaataaaaattgcatctctaatgtacaatttca |
2555741 |
T |
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| Q |
424 |
cacttatactatttctattgtagcttatagtaaaaatgagagcatagaattataatgtgtgtgcatgtgtagattgaatttggattagacaactaataac |
523 |
Q |
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| T |
2555742 |
cacttatactatttctattgtagcttatagtaaaaatgagagcatagaattataatgtgtgtgcatgtgtagattgaatttggattagacaactaataac |
2555841 |
T |
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| Q |
524 |
ctaaatttgtatatttaaatctcattttgaaatgtcaacatatgagtttttatacaaaaaatgttagttgttagtatgatata |
606 |
Q |
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| T |
2555842 |
ctaaatttgtatatttaaatctcattttgaaatgtcaac--atgagtttttatacaaaaaatgttagttgttagtatgatata |
2555922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 193 - 560
Target Start/End: Original strand, 2565150 - 2565515
Alignment:
| Q |
193 |
aaacatttttgtacaagtaaatgcaaaacactatttttatagctaaggactttatccttaaaatatttaacatttgtggaaatttaacttgagnnnnnnn |
292 |
Q |
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| T |
2565150 |
aaacatattagtataagtaaatgcaaaacactatttttatagctaaggtcattatccttaaaatatttaacatttgggaaaatttaacttgagttttttt |
2565249 |
T |
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| Q |
293 |
cttt-taataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggtt |
391 |
Q |
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| T |
2565250 |
ttttcttttaaataggtgatgattgtattgcggttaacggtggctccttttttattaatattactcgggttacttgcggaccaggccatggaataaggtt |
2565349 |
T |
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| Q |
392 |
aataaaaattgcatctctaatgtacaatttcacacttatactatttctattgtagcttatagtaaaaatgagagcatagaattataatgtgtgtgcatgt |
491 |
Q |
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| T |
2565350 |
aataaaaatttcatctctaaagttcaatttcacacatatactatttctattgtacct--ttgtaaaaatgagagcatagaattataatgtgtgggcatgt |
2565447 |
T |
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| Q |
492 |
gtagattgaatttggattagacaactaataacctaaatttgtatatttaaatctcattttgaaatgtca |
560 |
Q |
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| T |
2565448 |
gtagattgaatttggattagagaattaataacctaaatttgtat-tttaaatctcattttgaaatgtca |
2565515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 2565018 - 2565152
Alignment:
| Q |
24 |
caacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaattctatgataagatccggtaagtaaagtttatatattatgatcattatt |
123 |
Q |
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| T |
2565018 |
caacactgatggatttgacatttctcgttccaataatatctcgatagaaaattctaagataagatccggtaagtaaagtttatat--taagat---tatt |
2565112 |
T |
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| Q |
124 |
ttataagtgtcgtatagaaattgatatgaaaaatgtgaaaaa |
165 |
Q |
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| T |
2565113 |
ttagaagtgtc--atagaaattgatatgaaaaatgtggaaaa |
2565152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 423
Target Start/End: Original strand, 2541788 - 2541916
Alignment:
| Q |
294 |
ttttaataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaa |
393 |
Q |
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| T |
2541788 |
ttttaataaacaggtgatgattgtattgccatcaatggtggctcctcttttgtcaatgctacaaggattacttgtggacctggccatggaataaggttta |
2541887 |
T |
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| Q |
394 |
taaaaattgcatctctaatgtacaatttca |
423 |
Q |
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| T |
2541888 |
t-aaaattgtgtctctaaagttcaatttca |
2541916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 2550061 - 2550158
Alignment:
| Q |
300 |
taaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaa |
397 |
Q |
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| T |
2550061 |
taaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
2550158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 548 - 606
Target Start/End: Original strand, 2565529 - 2565590
Alignment:
| Q |
548 |
ttttgaaatgtcaacatatgag---tttttatacaaaaaatgttagttgttagtatgatata |
606 |
Q |
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| T |
2565529 |
ttttgaaatgtcaacatatgagttttttttttacaaacaatgttagctgttagtatgatata |
2565590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 1830237 - 1830334
Alignment:
| Q |
305 |
aggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaaaattg |
402 |
Q |
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| T |
1830237 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaaaattg |
1830334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 1864682 - 1864779
Alignment:
| Q |
305 |
aggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaaaattg |
402 |
Q |
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| T |
1864682 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaaaattg |
1864779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 2525077 - 2525170
Alignment:
| Q |
299 |
ataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggtta |
392 |
Q |
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| T |
2525077 |
ataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtta |
2525170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 32924780 - 32924820
Alignment:
| Q |
299 |
ataaataggtgatgattgtattgcgcttaatggtggctcct |
339 |
Q |
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| T |
32924780 |
ataaataggtgatgattgtattgccatcaatggtggctcct |
32924820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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