View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_24 (Length: 258)
Name: NF3306_1D_low_24
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45601678 - 45601923
Alignment:
| Q |
1 |
taattgaagtcaaatttagaaaggagaacaaatcattccatttgagataataaaaaagagtagttttaattcatagataatggttaagctaactatagtt |
100 |
Q |
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| T |
45601678 |
taattgaagtcaaatttagaaaggagaacaaatcattccatttgagataataaaaaagagtagttttaattcatagataatggttaagttaactatagtt |
45601777 |
T |
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| Q |
101 |
ggaagggcaaacgatggattacctctagcacaaggactaagatatgtaaatgaagaaaatggttatctttcacgatacaggcaacaagcagaatttatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45601778 |
ggaagggcaaacgatggattacctctagcacaaggactaagatatgtaaatgaagaaaatggttatctttcacgatacaggcaacaggcagaatttatac |
45601877 |
T |
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| Q |
201 |
tccaagaaatttcacaaggagcattgacaccttccatgatgtccat |
246 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
45601878 |
tccaagaaatttcaaaaggagcattgacaccttccatgatgaccat |
45601923 |
T |
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