View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_25 (Length: 257)
Name: NF3306_1D_low_25
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_25 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: scaffold0376 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 1802 - 1577
Alignment:
| Q |
23 |
cattattcatagaatagaatagaatagaagaaggagtaacaagttacaaaccttgtttttggcatttttatctatttagtaaaatgtgattttcccgtgt |
122 |
Q |
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| T |
1802 |
cattattcatagaatagaatagaatagaagaaggagtaacaagttacaaaccttgtttttggcatttttatctatttagtaaaatgtgattttcccgtgt |
1703 |
T |
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| Q |
123 |
taaacattcctaaagcagtacggtaattaatataccattgtccccaatacagcagaagttcagcaactaccaccaatgtttcgagaaatcctcgatcaat |
222 |
Q |
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| T |
1702 |
taaacattcctaaagcagtacggtaattaatataccattgtccccaatacagcagaagttcagcaactaccaccaatgtttctagaaatcctcgatcaat |
1603 |
T |
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| Q |
223 |
gtttaccattctaattcctcaaacac |
248 |
Q |
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| T |
1602 |
gtttaccattctaattcctcaaacac |
1577 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 38514485 - 38514544
Alignment:
| Q |
68 |
acaaaccttgtttttggcatttttatcta-tttagtaaaatgtgattttcccgtgttaaa |
126 |
Q |
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| T |
38514485 |
acaaaccttgtttttggcatctttgtctactttagtaaaatgtggttttccgatgttaaa |
38514544 |
T |
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