View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_27 (Length: 245)
Name: NF3306_1D_low_27
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 28329888 - 28329732
Alignment:
| Q |
81 |
gagaaccaaggaattaaccaaattcaaagatacgaaggttgagaatagtggttaagacttgaatgttacaaggggtttgatgaatttataaagcttttgt |
180 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28329888 |
gagaacaaaggaattaaccaaattcaaagatactaaggttgagaatagtggttaaggcttgaatgttacaaggggtttgatgaatttataaagcttttgt |
28329789 |
T |
|
| Q |
181 |
aacacaagcaattgatcatagttttgccagttatgtcttcatcttcaacagtataat |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28329788 |
aacacaagcaattgatcatagttttgccagttatgtcttcatcttcaacagtataat |
28329732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 28507524 - 28507368
Alignment:
| Q |
81 |
gagaaccaaggaattaaccaaattcaaagatacgaaggttgagaatagtggttaagacttgaatgttacaaggggtttgatgaatttataaagcttttgt |
180 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507524 |
gagaacaaaggaattaaccaaattcaaagatactaaggttgagaatagtggttaaggcttgaatgttacaaggggtttgatgaatttataaagcttttgt |
28507425 |
T |
|
| Q |
181 |
aacacaagcaattgatcatagttttgccagttatgtcttcatcttcaacagtataat |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507424 |
aacacaagcaattgatcatagttttgccagttatgtcttcatcttcaacagtataat |
28507368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 28301784 - 28301858
Alignment:
| Q |
7 |
ttttgagcattttaaggatgccatcctttacaaaaaggaaacacgactactttggagaaaatctaaacggcttag |
81 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
28301784 |
ttttgagcattttatggatgccatcctttacaaaaaggaaacacgactactttggtgaaaatctaaaccgcttag |
28301858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 28510289 - 28510215
Alignment:
| Q |
7 |
ttttgagcattttaaggatgccatcctttacaaaaaggaaacacgactactttggagaaaatctaaacggcttag |
81 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
28510289 |
ttttgagcattttatggatgccatcctttacaaaaaggaaacacgactactttggtgaaaatctaaaccgcttag |
28510215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 34841902 - 34841752
Alignment:
| Q |
7 |
ttttgagcattttaaggatgccatcctttacaaaaaggaa-acacgactactttggagaaaatctaaacggcttagagaaccaaggaattaaccaaattc |
105 |
Q |
| |
|
||||||||| ||||| ||| ||||||||| | ||||||| |||| |||||||| || | ||||||||| || |||||||||||| |||||||| ||| |
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| T |
34841902 |
ttttgagcactttaaagatatcatcctttatagaaaggaagacaccactacttttgaagatgtctaaacggatttgagaaccaaggagttaaccaagttc |
34841803 |
T |
|
| Q |
106 |
aaagatacg-aaggttgagaatagtggttaagacttgaatgttacaagggg |
155 |
Q |
| |
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|||||| | |||||||| | |||||| ||| ||||||| |||||||||| |
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|
| T |
34841802 |
aaagatttgaaaggttgatgaaagtggtgaaggcttgaatattacaagggg |
34841752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 27449107 - 27448962
Alignment:
| Q |
8 |
tttgagcattttaaggatgccatcctttacaaaaaggaa-acacgactactttggagaaaatctaaacggcttagagaaccaaggaattaaccaaattca |
106 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||| |||| |||||||||||| | || || |||||| ||||||||||||||| ||||| |||| |
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| T |
27449107 |
tttgagcatttcaaggataccatcctttatggtaaggaggacactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttca |
27449008 |
T |
|
| Q |
107 |
aagatacgaaggttgagaatagtggttaagacttgaatgttacaag |
152 |
Q |
| |
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| || | ||||||||| | || || ||| ||||||||||||||| |
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| T |
27449007 |
aggacatgaaggttgatgaaggtagtgaaggcttgaatgttacaag |
27448962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 450989 - 451046
Alignment:
| Q |
7 |
ttttgagcattttaaggatgccatcctttacaaaaaggaaa-cacgactactttggag |
63 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||| ||| |||||||||||| |
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| T |
450989 |
ttttgagcattttaaagataccatcctttacggaaaggaaatcaccactactttggag |
451046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 18854010 - 18854110
Alignment:
| Q |
52 |
actactttggagaaaatctaaacggcttagagaaccaaggaattaaccaaattcaaagatacgaaggttgagaatagtggttaagacttgaatgttacaa |
151 |
Q |
| |
|
|||||||||||| | || || |||||| ||||||||||||||| ||||| ||||| || ||||||||| | ||||| ||| |||||||||||||| |
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| T |
18854010 |
actactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttcaaggacttgaaggttgatgaaggtggtgaaggcttgaatgttacaa |
18854109 |
T |
|
| Q |
152 |
g |
152 |
Q |
| |
|
| |
|
|
| T |
18854110 |
g |
18854110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 28489976 - 28490121
Alignment:
| Q |
8 |
tttgagcattttaaggatgccatcctttacaaaaaggaaa-cacgactactttggagaaaatctaaacggcttagagaaccaaggaattaaccaaattca |
106 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||| ||| |||||||||||| | || || |||||| ||||||||||||||| ||||| |||| |
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| T |
28489976 |
tttgagcatttcaaggataccatcctttatggtaaggagggcactactactttggaggaggtccaagcggctttgagaaccaaggaattgaccaagttca |
28490075 |
T |
|
| Q |
107 |
aagatacgaaggttgagaatagtggttaagacttgaatgttacaag |
152 |
Q |
| |
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| || | ||||||||| | || || ||| ||||||||||||||| |
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| T |
28490076 |
aggacatgaaggttgatgaaggtagtgaaggcttgaatgttacaag |
28490121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 16633378 - 16633478
Alignment:
| Q |
55 |
actttggagaaaatctaaacggcttagagaaccaaggaattaaccaaattcaaagatacgaaggttgagaatagtggttaagacttgaatgttacaaggg |
154 |
Q |
| |
|
||||||||| || ||||| | ||| ||||||||| || |||||||||||||| || ||||||||| ||||||| |||| ||||||||| |||||| |
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| T |
16633378 |
actttggaggaagtctaagcaactttgagaaccaaagagttaaccaaattcaaggagttgaaggttgatgatagtggataaggcttgaatgtctcaaggg |
16633477 |
T |
|
| Q |
155 |
g |
155 |
Q |
| |
|
| |
|
|
| T |
16633478 |
g |
16633478 |
T |
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