View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_28 (Length: 242)
Name: NF3306_1D_low_28
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 11225366 - 11225172
Alignment:
| Q |
27 |
caatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacac |
126 |
Q |
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| T |
11225366 |
caatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatgcataacatttaatcaatcaacac |
11225267 |
T |
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| Q |
127 |
acccaaaagtatatttacagctatctttttccatcagttttcataatccttttcaattaaacaaccaacttacattcaggtgcacatcaaacatt |
221 |
Q |
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| T |
11225266 |
acccaaaagtatatttacagctatctttttccatcagtttgcagaatccttttcaattaaacaaccaacttacattcaggtacacatcaaacatt |
11225172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 11225565 - 11225365
Alignment:
| Q |
19 |
acatcaagcaatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatca |
118 |
Q |
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| T |
11225565 |
acatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatca |
11225466 |
T |
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| Q |
119 |
accaacacacccaaaagtatatttacagctatctttttccatcagttttcataatccttttcaattaaacaaccaacttacattcaggtgcacatcaaac |
218 |
Q |
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| T |
11225465 |
accaacacacccaaaagtatacttacagctatatttttcaatcaacttgcagaatccttttgaattaaataatcagcttacattcaggtacacattaaac |
11225366 |
T |
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| Q |
219 |
a |
219 |
Q |
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| T |
11225365 |
a |
11225365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 11225156 - 11225024
Alignment:
| Q |
75 |
tcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtatatttacagctatctttttccatcagttttcataatc |
174 |
Q |
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||||||||||||||| ||| ||||||||| ||||||| |||||||||||||| || |||||||| ||||| | ||||||||| || | ||| || |||| |
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| T |
11225156 |
tcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcagaatc |
11225057 |
T |
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| Q |
175 |
cttttcaattaaacaaccaacttacattcaggt |
207 |
Q |
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| T |
11225056 |
tttttcaattaaacaatcagcttacaatcaggt |
11225024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 11225000 - 11224891
Alignment:
| Q |
41 |
aattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatcaac-caacacacccaaaagtata |
139 |
Q |
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| T |
11225000 |
aattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactcttatactacatgcacaacatttaatcaacttaacacacccaaaagtata |
11224902 |
T |
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| Q |
140 |
tttacagctat |
150 |
Q |
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||||| |||| |
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| T |
11224901 |
cttacaactat |
11224891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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