View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_29 (Length: 242)
Name: NF3306_1D_low_29
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_29 |
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| [»] scaffold0251 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13783515 - 13783746
Alignment:
| Q |
1 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13783515 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagactcaagtgtaacgttgatgcctccttttcagacgtcaacaacaagattgg |
13783614 |
T |
|
| Q |
101 |
tttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgaga |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13783615 |
tttgggcatgtgtattagagattcaacaggattccatgtccgatccaaaattatgtgtttctctccgttgtgctctgttgatgttggagaggcgctggga |
13783714 |
T |
|
| Q |
201 |
ctgtatcatgcaattcggtggatccatgaact |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
13783715 |
ctgtatcatgcaattcggtggatccatgaact |
13783746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 21588456 - 21588342
Alignment:
| Q |
118 |
gagattcaacaggattccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcg |
217 |
Q |
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|||||||| ||||| |||||| || || |||| || ||| ||| |||| |||||||||||||| |||| ||||| ||| || |||||||||||||| |
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| T |
21588456 |
gagattcagcaggaaaccatgttcgctcaaaaaccatatggttcactccattgtgctctgttgacattggggaggccctggttctatatcatgcaattcg |
21588357 |
T |
|
| Q |
218 |
gtggatccatgaact |
232 |
Q |
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|||||| |||||||| |
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| T |
21588356 |
gtggattcatgaact |
21588342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 7097647 - 7097611
Alignment:
| Q |
196 |
tgagactgtatcatgcaattcggtggatccatgaact |
232 |
Q |
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||||||| ||||||||||||||||||||| ||||||| |
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| T |
7097647 |
tgagactttatcatgcaattcggtggatcaatgaact |
7097611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2659 - 2428
Alignment:
| Q |
1 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattgg |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2659 |
tagtagatggagattcaaacatccgatggaggaaacctagaagtggcagactcaagtgtaatgttgatgcctctttttcagacgtcaacaacaagattgg |
2560 |
T |
|
| Q |
101 |
tttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgaga |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2559 |
tttgggcatgtgtattagagattcaacaggatcccatgtccgatcaaaaatcatgtgtttctctccgttgtgctctgttgatgttggagaggcgctcgga |
2460 |
T |
|
| Q |
201 |
ctgtatcatgcaattcggtggatccatgaact |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
2459 |
ctgtatcatgcaattcggtggatccatgaact |
2428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 15789687 - 15789918
Alignment:
| Q |
1 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattgg |
100 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
15789687 |
tagtagatggagtttctaacatcagatggaggaaacctagaagtggtagactcaagtgtaatgttgatgcatcattttcagaagtcaacaacaagattgg |
15789786 |
T |
|
| Q |
101 |
tttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgaga |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||| | |
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| T |
15789787 |
tttgggcatgtgtattagagattcaacaggatcccatgtccgattcaaaatcatgtttttctctccgttgtgctctgtggatgttggagaggcgctgggg |
15789886 |
T |
|
| Q |
201 |
ctgtatcatgcaattcggtggatccatgaact |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
15789887 |
ctgtatcatgcaattcggtggatccatgaact |
15789918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8724354 - 8724583
Alignment:
| Q |
1 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattgg |
100 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || |||||||| ||||||||||||||||| |
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| T |
8724354 |
tagtagatggagtttctaacatcagatggaggaaacctagaagtggtagactcaagtgtaacgttgatgcatcattttcagaagtcaacaacaagattgg |
8724453 |
T |
|
| Q |
101 |
tttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgaga |
200 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
8724454 |
tttgggcatatgtattagagattcaacaggatcccatgtccgatccaaaatcatgtttttctctccgttgtgctatgtggatgttggagaggcgctgggg |
8724553 |
T |
|
| Q |
201 |
ctgtatcatgcaattcggtggatccatgaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
8724554 |
ttgtatcatgcaattcggtggatccatgaa |
8724583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 13065866 - 13065700
Alignment:
| Q |
1 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttcagacgtcaacaacaagattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
13065866 |
tagtagatggagattcaaacatcagatggaggaaacctagaagtggcagactcaagtgtaacattgatgcctctttttcagacgtcaacaacaagattgg |
13065767 |
T |
|
| Q |
101 |
tttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgtttctctccg |
167 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
13065766 |
tttgggcatgtgtattagagattcaaaaggattccatgtccgatcaaaaatcatgtgtttctctccg |
13065700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 13065701 - 13065662
Alignment:
| Q |
193 |
cgctgagactgtatcatgcaattcggtggatccatgaact |
232 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
13065701 |
cgctgggactgtatcatgcaattcggtggatccatgaact |
13065662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 20089334 - 20089249
Alignment:
| Q |
147 |
aaaatcacatgtttctctccgttgtgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatccatgaact |
232 |
Q |
| |
|
|||||||| || ||| |||| ||||||||| |||||||||||||||| ||| | || |||||||||||||||||||| |||||||| |
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|
| T |
20089334 |
aaaatcacgtggttcactccattgtgctctattgatgttggagaggccctgtgtctttatcatgcaattcggtggattcatgaact |
20089249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 10515825 - 10515873
Alignment:
| Q |
26 |
atggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctcc |
74 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| |||||||||||||||||| |
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|
| T |
10515825 |
atggaggaaaccgagaagtggtagatacaaatgtaatgttgatgcctcc |
10515873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 11644471 - 11644534
Alignment:
| Q |
17 |
aaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttca |
80 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||| || || ||| | ||||||||||||||| |
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| T |
11644471 |
aaacttcagatggaggaaaccgagaagtggcagatataaatgcaatatcgatgcctccttttca |
11644534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 21085250 - 21085189
Alignment:
| Q |
171 |
tgctctgttgatgttggagaggcgctgagactgtatcatgcaattcggtggatccatgaact |
232 |
Q |
| |
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|||||||| |||||||| ||||| |||| | | ||||| || |||||||||||||||||||| |
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| T |
21085250 |
tgctctgtggatgttggggaggctctgacattatatcacgcgattcggtggatccatgaact |
21085189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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