View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_1D_low_3 (Length: 566)

Name: NF3306_1D_low_3
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_1D_low_3
NF3306_1D_low_3
[»] chr2 (13 HSPs)
chr2 (7-404)||(35681636-35682036)
chr2 (7-184)||(31635525-31635698)
chr2 (176-399)||(31635882-31636112)
chr2 (317-399)||(27952637-27952719)
chr2 (334-404)||(2165636-2165706)
chr2 (317-376)||(280297-280356)
chr2 (322-388)||(22011132-22011198)
chr2 (510-561)||(35682142-35682193)
chr2 (326-400)||(23457389-23457462)
chr2 (341-395)||(33053187-33053241)
chr2 (323-399)||(36648624-36648700)
chr2 (323-399)||(36614845-36614921)
chr2 (301-402)||(32162225-32162325)
[»] chr7 (8 HSPs)
chr7 (7-399)||(4302838-4303234)
chr7 (306-395)||(11001090-11001179)
chr7 (322-398)||(1786424-1786500)
chr7 (304-398)||(1217473-1217565)
chr7 (322-399)||(13882995-13883071)
chr7 (323-395)||(8915437-8915509)
chr7 (317-378)||(1369559-1369620)
chr7 (322-404)||(11228470-11228551)
[»] chr8 (9 HSPs)
chr8 (7-282)||(37192736-37193008)
chr8 (334-404)||(22922157-22922227)
chr8 (326-399)||(26377776-26377849)
chr8 (324-399)||(22512360-22512435)
chr8 (301-404)||(23573263-23573365)
chr8 (329-402)||(2688926-2688999)
chr8 (335-399)||(2188719-2188783)
chr8 (325-376)||(24577813-24577864)
chr8 (348-391)||(37193064-37193107)
[»] chr5 (5 HSPs)
chr5 (269-404)||(21845197-21845335)
chr5 (301-395)||(18252147-18252241)
chr5 (334-376)||(19677630-19677672)
chr5 (370-404)||(21849278-21849312)
chr5 (370-404)||(21857192-21857226)
[»] chr3 (6 HSPs)
chr3 (329-399)||(3064051-3064121)
chr3 (317-399)||(365863-365945)
chr3 (323-387)||(8536655-8536719)
chr3 (323-399)||(2472969-2473045)
chr3 (363-399)||(43304270-43304306)
chr3 (336-381)||(24516698-24516743)
[»] chr1 (8 HSPs)
chr1 (301-403)||(10926923-10927026)
chr1 (322-404)||(10927852-10927934)
chr1 (317-389)||(8966022-8966094)
chr1 (301-399)||(13441901-13441997)
chr1 (324-399)||(31915287-31915365)
chr1 (317-404)||(23988968-23989055)
chr1 (324-400)||(40805609-40805685)
chr1 (324-387)||(31522584-31522647)
[»] scaffold0110 (1 HSPs)
scaffold0110 (334-404)||(45923-45993)
[»] chr6 (15 HSPs)
chr6 (334-404)||(30049629-30049699)
chr6 (334-404)||(30051916-30051986)
chr6 (334-401)||(3541959-3542026)
chr6 (301-404)||(18203164-18203265)
chr6 (324-402)||(12881774-12881852)
chr6 (325-404)||(12778664-12778743)
chr6 (308-399)||(22888989-22889080)
chr6 (317-399)||(22910541-22910623)
chr6 (301-395)||(34374051-34374145)
chr6 (308-399)||(22873546-22873637)
chr6 (354-399)||(11194398-11194443)
chr6 (322-378)||(8047661-8047717)
chr6 (368-404)||(18726879-18726915)
chr6 (324-388)||(32361109-32361173)
chr6 (335-373)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (317-404)||(22716357-22716444)
chr4 (317-404)||(22988773-22988860)
chr4 (334-404)||(13085398-13085471)
chr4 (343-401)||(6659640-6659697)
chr4 (301-402)||(10494651-10494752)
chr4 (323-376)||(7635039-7635092)
chr4 (322-384)||(9260313-9260375)
[»] scaffold0054 (3 HSPs)
scaffold0054 (323-387)||(49063-49127)
scaffold0054 (317-399)||(10394-10476)
scaffold0054 (343-382)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (322-395)||(145483-145555)
scaffold0024 (322-386)||(144177-144243)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Original strand, 35681636 - 35682036
Alignment:
Q  7 ggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681636 ggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcg 35681735  T
Q  107 tttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35681736 tttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagtctg 35681835  T
Q  207 ctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcat---ctcagt 303  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||    
T  35681836 ctattgttggtaccttgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattgaaggagt 35681935  T
Q  304 cgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttata 403  Q
    | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681936 caacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttata 35682035  T
Q  404 g 404  Q
    |    
T  35682036 g 35682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 31635525 - 31635698
Alignment:
Q  7 ggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcg 106  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  31635525 ggtactctcaccatttggtgttctgc---atgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcg 31635621  T
Q  107 tttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttat 184  Q
    | || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||  || |||||||||||    
T  31635622 tcta-tgtgttggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat 31635698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 176 - 399
Target Start/End: Original strand, 31635882 - 31636112
Alignment:
Q  176 ctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatggg 275  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||||| ||||  |||   |||||||||||||    
T  31635882 ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg 31635981  T
Q  276 atccaggtgg----tctcttgttcat---ctcagtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggagga 368  Q
    |||| |||||     |||||||||||      |||| |||||||| | || | |||||||  || ||||||||||  |||||||||||||||||||||||    
T  31635982 atccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggagga 31636081  T
Q  369 gactgatgcaggagggttttcttagtaattt 399  Q
    |||||||| ||||||||||| ||||||||||    
T  31636082 gactgatgtaggagggttttattagtaattt 31636112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 27952719 - 27952637
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  27952719 aagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataattt 27952637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 2165636 - 2165706
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  2165636 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattttatag 2165706  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 280356 - 280297
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 376  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  280356 aagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatg 280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 22011132 - 22011198
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 388  Q
    |||||| |||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  22011132 ctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggagggtttt 22011198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 35682142 - 35682193
Alignment:
Q  510 agaacattatagtatttatttcagttggagcctcagtttcattcatctcagt 561  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  35682142 agaacattatagtatttatttcagtttgagcctcagtttcattcatttcagt 35682193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 23457389 - 23457462
Alignment:
Q  326 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 400  Q
    ||||||| |||||||||||   |||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtagga-ggttttcttagtaatttt 23457462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 33053187 - 33053241
Alignment:
Q  341 cggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 395  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  33053187 cggggtcgagttcttcagaggtggaggagactgatgtagaagggtttccttagta 33053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 36648624 - 36648700
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    ||||||||||  |||||| || ||||||||||||| || ||||||||||| ||| |||||||||| |||||||||||    
T  36648624 tttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggagggtttccttagtaattt 36648700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 36614845 - 36614921
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    ||||||||||  | ||||||| ||||||||||||| || ||||||||||| | | |||||||||| |||||||||||    
T  36614845 tttatcagaacaaaaactcggagtcgagttcttcatagatggaggagactcacgtaggagggtttccttagtaattt 36614921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 402
Target Start/End: Complemental strand, 32162325 - 32162225
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 400  Q
    |||| |||||||| | |||| ||||||||||| ||||||||  ||| ||||| ||||||| ||||||||||| ||| | |||| ||| ||||| ||||||    
T  32162325 agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgtaagaggatttccttag-aatttt 32162227  T
Q  401 at 402  Q
    ||    
T  32162226 at 32162225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 399
Target Start/End: Original strand, 4302838 - 4303234
Alignment:
Q  7 ggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcg 106  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  4302838 ggtactctcaccatttggtgttctgc---atgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcg 4302934  T
Q  107 tttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctg 206  Q
    |  ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| ||||    
T  4302935 tcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctg 4303034  T
Q  207 ctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtgg----tctcttgttcat---ct 299  Q
    |||||||||||||  ||| ||||| | ||| |||||||||||| ||||  ||||  ||||||||||||||||| |||||     |||||||||||         
T  4303035 ctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggag 4303134  T
Q  300 cagtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
     ||||||||||||| | |||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  4303135 gagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaattt 4303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 11001179 - 11001090
Alignment:
Q  306 acatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 395  Q
    |||||||| | |||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  11001179 acatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggagggtttccttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 322 - 398
Target Start/End: Original strand, 1786424 - 1786500
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 398  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1786424 ctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 1217565 - 1217473
Alignment:
Q  304 cgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 398  Q
    |||||||||| |||| | |||||||| || | ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  1217565 cgacatgcat-gaaatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaatt 1217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 399
Target Start/End: Complemental strand, 13883071 - 13882995
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  13883071 ctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgatgcaggagggttttattagtaattt 13882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 8915509 - 8915437
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 395  Q
    ||||| |||| ||||| |||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||    
T  8915509 tttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagggtttccttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 1369559 - 1369620
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 378  Q
    |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||||    
T  1369559 aagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagactcatgca 1369620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 11228470 - 11228551
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    |||||| |||| |||||||||||| | ||||||| ||||| |||| ||||||||| |||| ||||| | ||||||||||||||    
T  11228470 ctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtaggatggtttccatagtaattttatag 11228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 37192736 - 37193008
Alignment:
Q  7 ggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcg 106  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |     
T  37192736 ggtactctcaccatttgatgttctgc---atgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatcca 37192832  T
Q  107 tttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctg 206  Q
     |||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||| | | ||||| ||| || |||||||||||||| |||||    
T  37192833 cttactgtgttggtttcattcattcctatacttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctg 37192932  T
Q  207 ctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccagg 282  Q
    | |||||||||||  ||||||||||||||||||||||||||||||||| |||||  ||||  ||||||||||||||    
T  37192933 caattgttggtacattgctcagtggctgctttgtccataaaaagggaccctcacagttcactcaatgggatccagg 37193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 22922227 - 22922157
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  22922227 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 26377776 - 26377849
Alignment:
Q  326 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaattt 26377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 22512435 - 22512360
Alignment:
Q  324 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  22512435 ttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 22512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 404
Target Start/End: Original strand, 23573263 - 23573365
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 400  Q
    |||| |||||||| | |||| |||||||| || || ||||| |||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||    
T  23573263 agtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg-tttcttagtaatttt 23573361  T
Q  401 atag 404  Q
    ||||    
T  23573362 atag 23573365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 2688926 - 2688999
Alignment:
Q  329 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttat 402  Q
    |||| ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||  |||||| ||||||    
T  2688926 agaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggagggtttctttagtatttttat 2688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 2188783 - 2188719
Alignment:
Q  335 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    ||||||||| ||||||||||||| || ||||||||||| | | |||| ||||| |||||||||||    
T  2188783 agaactcggagtcgagttcttcatagatggaggagactcacgtaggaaggtttccttagtaattt 2188719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 24577864 - 24577813
Alignment:
Q  325 tatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 376  Q
    |||||||| ||||||||  |||||| ||||||||| ||||||||||||||||    
T  24577864 tatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatg 24577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 37193064 - 37193107
Alignment:
Q  348 gagttcttcagaggtggaggagactgatgcaggagggttttctt 391  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  37193064 gagttcttcagagatggagtaaactgatgcaggagggttttctt 37193107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 269 - 404
Target Start/End: Complemental strand, 21845335 - 21845197
Alignment:
Q  269 caatgggatccaggtggtctcttgttcatctcag---tcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtgga 365  Q
    ||||||||||| |||||| ||||||||||   ||   || |||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21845335 caatgggatccgggtggtttcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtgga 21845236  T
Q  366 ggagactgatgcaggagggttttcttagtaattttatag 404  Q
      ||||||||||| |||||||||||||||||||||||||    
T  21845235 acagactgatgcaagagggttttcttagtaattttatag 21845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 18252147 - 18252241
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 395  Q
    |||| |||||||| ||||||  ||||||| || |||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  18252147 agtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagggtttccttagta 18252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 19677672 - 19677630
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677672 gagaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 21849312 - 21849278
Alignment:
Q  370 actgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||| |||||||||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatag 21849278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  370 actgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatag 21857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 3064121 - 3064051
Alignment:
Q  329 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3064121 agaacgagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaattt 3064051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 365945 - 365863
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| |||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  365945 aagctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgcaggaggattttattagtaattt 365863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 8536719 - 8536655
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 387  Q
    ||||||||||  ||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||||    
T  8536719 tttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 2473045 - 2472969
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||||||||| |||||||||||||||||||||| | | ||||||||  ||||| ||  | |||||| ||||||||||    
T  2473045 tttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaattt 2472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 43304306 - 43304270
Alignment:
Q  363 ggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaattt 43304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  336 gaactcggggtcgagttcttcagaggtggaggagactgatgcagga 381  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 10926923 - 10927026
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc-ttagtaattt 399  Q
    |||| |||||||| | |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||    
T  10926923 agtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggatgattttcattagtaattt 10927022  T
Q  400 tata 403  Q
    ||||    
T  10927023 tata 10927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 10927852 - 10927934
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    |||||| |||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||    
T  10927852 ctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagggtttccttagtaattttatag 10927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 8966094 - 8966022
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 389  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  8966094 aagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtaggaaggttttc 8966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 301 - 399
Target Start/End: Complemental strand, 13441997 - 13441901
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| |||||||| | |||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13441997 agtcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaagggttttgttagtaattt 13441901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 31915287 - 31915365
Alignment:
Q  324 ttatcagaaagagaactcggggtcgagttcttcagaggt---ggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| |||| ||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||| ||||||||||    
T  31915287 ttattagaacgagaactcggggttgagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaattt 31915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 23988968 - 23989055
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    |||| ||||| || || ||||||||  |||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||    
T  23988968 aagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgtaggagggtttccttagtaatttcatag 23989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 40805609 - 40805685
Alignment:
Q  324 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 400  Q
    |||||||||  ||||||||||||||| ||||| | |||||||||||||||||| ||||  |||| |||| |||||||    
T  40805609 ttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagtttccttattaatttt 40805685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 31522584 - 31522647
Alignment:
Q  324 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 387  Q
    ||||||||| |||||||||  ||||||||||||||||||||| | | |||||| ||||||||||    
T  31522584 ttatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggagggttt 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 45993 - 45923
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45993 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 45923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 30049629 - 30049699
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30049629 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 30051916 - 30051986
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30051916 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 3541959 - 3542026
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 401  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  3541959 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaatttta 3542026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 404
Target Start/End: Original strand, 18203164 - 18203265
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 400  Q
    |||| |||||||| |||| | |||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  18203164 agtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgtaggaggg-tttctcagtaatttt 18203261  T
Q  401 atag 404  Q
    ||||    
T  18203262 atag 18203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 324 - 402
Target Start/End: Original strand, 12881774 - 12881852
Alignment:
Q  324 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttat 402  Q
    ||||| ||| |||| ||||||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||    
T  12881774 ttatcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgtaggagggtttccttagtaattttat 12881852  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 325 - 404
Target Start/End: Complemental strand, 12778743 - 12778664
Alignment:
Q  325 tatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    |||||||| ||||| | |||||| |||||||||||||||||||||||||||| | |||||||||| ||||| || |||||    
T  12778743 tatcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagggttttcatagtatttctatag 12778664  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 22888989 - 22889080
Alignment:
Q  308 atgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||||||||||||||||||||    
T  22888989 atgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagtaattt 22889080  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 22910541 - 22910623
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||||||||||||||||||||    
T  22910541 aagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagtaattt 22910623  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 34374145 - 34374051
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 395  Q
    |||| |||||||| | || | |||||||| || ||||||||||||| |||||||||||| |||||||||||| ||| | |||||||| |||||||    
T  34374145 agtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagggtttccttagta 34374051  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 22873546 - 22873637
Alignment:
Q  308 atgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||||| | |||| |||||||| || ||||||| ||| |||| ||| | ||||||||| |||||||||| ||||||||||||||| ||||||    
T  22873546 atgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtaggagggttttcttaataattt 22873637  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 11194398 - 11194443
Alignment:
Q  354 ttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggagagttttcttagtaattt 11194443  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 8047717 - 8047661
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 378  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  8047717 ctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 18726879 - 18726915
Alignment:
Q  368 agactgatgcaggagggttttcttagtaattttatag 404  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatag 18726915  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 32361109 - 32361173
Alignment:
Q  324 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 388  Q
    |||||| || ||||||||| ||||||||| || |||||||||| ||||| ||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 18720031 - 18720069
Alignment:
Q  335 agaactcggggtcgagttcttcagaggtggaggagactg 373  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18720031 agaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 22716357 - 22716444
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||  | ||||| |||||||||| ||||    
T  22716357 aagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgcagttgagttttattagtaatttaatag 22716444  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 22988860 - 22988773
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 404  Q
    |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||  | ||||| |||||||||| ||||    
T  22988860 aagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgcagttgagttttattagtaatttaatag 22988773  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 13085471 - 13085398
Alignment:
Q  334 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg---ttttcttagtaattttatag 404  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||   |||| |||||||||||||||    
T  13085471 gagaactcggggtcgagttcttcagagatggaagagactgatgtaggagggtgttttttttagtaattttatag 13085398  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 6659697 - 6659640
Alignment:
Q  343 gggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 401  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  6659697 gggtcgagttcttcagaggtagaggagactgatgtaggaggg-tttcttagtaatttta 6659640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 10494651 - 10494752
Alignment:
Q  301 agtcgacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 400  Q
    ||||||||||||| | ||||  |||||||| |  |||||| | |||||||||||||||| || ||| ||||||||| | |||||||| ||||||| ||||    
T  10494651 agtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagggtttccttagtattttt 10494750  T
Q  401 at 402  Q
    ||    
T  10494751 at 10494752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 7635039 - 7635092
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 376  Q
    ||||| |||| ||||| | ||||||||||||||||||| |||||||||||||||    
T  7635039 tttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatg 7635092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 9260313 - 9260375
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 384  Q
    |||||||| ||  ||||||||||||||||||||| ||| || ||||||| ||||||| |||||    
T  9260313 ctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgcatgaggg 9260375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 49063 - 49127
Alignment:
Q  323 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 387  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  49063 tttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggagagttt 49127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 10394 - 10476
Alignment:
Q  317 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 399  Q
    |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||||||||||||||||||||    
T  10394 aagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagtaattt 10476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 37484 - 37523
Alignment:
Q  343 gggtcgagttcttcagaggtggaggagactgatgcaggag 382  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37484 gggtcgagttcttcagaggtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 145483 - 145555
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 395  Q
    |||||||||||  | |||||||| || |||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  145483 ctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggagggttttattagta 145555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 144243 - 144177
Alignment:
Q  322 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggag---actgatgcaggagggtt 386  Q
    |||||||||||  |||||||||| || |||||||||||| ||||||||   |||||||||||||||||    
T  144243 ctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgcaggagggtt 144177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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