View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_low_31 (Length: 239)
Name: NF3306_1D_low_31
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_31 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 2756137 - 2755919
Alignment:
| Q |
21 |
tcatgtgttttgactattgtttttggaggattaaatgtgagtatctaatttatatgctttttactaaacaaattgtgtttgttaaaagatcttcgttttt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756137 |
tcatgtgttttgactattgtttttggaggattaaatgtgagtatctaattcatatgctttttactaaacaaattgtgtttgttaaaagatcttcgttttt |
2756038 |
T |
|
| Q |
121 |
aattagtattgtcgttgttaatagattcgtcggtggaagcgctgggaagactcaattgttgcagatgaaaacaatcaatcacaaagtaaattaacaaatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756037 |
aattagtattgtcgttgttaatagattcgtcggtggaagcgctgggaagactcaattgttgcagatgaaaacaatcaatcacaaagtaaattaacaaatt |
2755938 |
T |
|
| Q |
221 |
tgatcagttaaggtgtaat |
239 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
2755937 |
tgatcagttatggtgtaat |
2755919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 2748095 - 2747910
Alignment:
| Q |
24 |
tgtgttttgactattgtttttggaggattaaatgtgagtatctaattta----tatgctttttacta-aacaaattgtgtttgttaaaagatcttcgttt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| || ||| ||||||| || ||||||||||||| || |||| ||||| || |
|
|
| T |
2748095 |
tgtgttttgactattatttttggaggactaaatgtgagtatctaatctaatcatatactttttattataacaaattgtgttcgtgaaaaactcttcttta |
2747996 |
T |
|
| Q |
119 |
ttaattagtattgtcgttgttaatagattcgtcggtggaagcgctgggaagactcaattgttgcagatgaaaacaatcaatcacaa |
204 |
Q |
| |
|
||||| ||||| | || |||||||||||||||| ||||||| ||||||| | || |||||||||||||||||| || |||||||| |
|
|
| T |
2747995 |
ttaataagtatcattgtcgttaatagattcgtcgatggaagccctgggaaaattctattgttgcagatgaaaaccatgaatcacaa |
2747910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University