View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_33 (Length: 237)
Name: NF3306_1D_low_33
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 1660985 - 1660761
Alignment:
| Q |
7 |
gattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaaggttccattagaacccattacaaatgatc |
106 |
Q |
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| T |
1660985 |
gattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaatgttccattagaactcattacaaatgatc |
1660886 |
T |
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| Q |
107 |
caggtttgggtcctcaactttgctatcgtacacaaactaatcttaaagggccaacacttacataccattttgaaggtgcaaacgtacatttaacgccgat |
206 |
Q |
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| T |
1660885 |
caagtttgggtcctcaactttgctatcgtacacaaactaatcttaaaggaccaacacttacataccattttgaaggtgcaaatttacttttaacgccgat |
1660786 |
T |
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| Q |
207 |
ccaaacgttcattccaccaactcca |
231 |
Q |
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| T |
1660785 |
ccaaacgttcattccaccaactcca |
1660761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 1679783 - 1679559
Alignment:
| Q |
7 |
gattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaaggttccattagaacccattacaaatgatc |
106 |
Q |
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| T |
1679783 |
gattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaaagttccattggaacccattacggatgatc |
1679684 |
T |
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| Q |
107 |
caggtttgggtcctcaactttgctatcgtacacaaactaatcttaaagggccaacacttacataccattttgaaggtgcaaacgtacatttaacgccgat |
206 |
Q |
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| T |
1679683 |
caagtttgggtcctcaactttgctatcgtacacaaactaatcttaaagggccaacacttacataccattttgaaggtgcaaatttacttttaacgccgat |
1679584 |
T |
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| Q |
207 |
ccaaacgttcattccaccaactcca |
231 |
Q |
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| T |
1679583 |
ccaaacgttcattccaccaactcca |
1679559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 1668250 - 1668030
Alignment:
| Q |
7 |
gattcgggaacaccaccgaatatattaccacaacaattgtatgatagagtgtatgttgaagtcaaaaacaaggttccattagaacccattacaaatgatc |
106 |
Q |
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||||| ||||||||||| | | |||| || |||||||||||||||| ||||| || |||||| | ||| || ||| |||| ||||||||||| |||||| |
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| T |
1668250 |
gattcaggaacaccaccaattctattgccgcaacaattgtatgataaagtgtttgctgaagtaagaaataaagttgcattgaaacccattacagatgatc |
1668151 |
T |
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| Q |
107 |
caggtttgggtcctcaactttgctatcgtacacaaactaatcttaaagggccaacacttacataccattttgaaggtgcaaacgtacatttaacgccgat |
206 |
Q |
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| T |
1668150 |
caagtttgggtactcaactttgttatcgtacacaaactaatcttaaaggaccaactctaacattccattttgtaggtgcaaatgtacttttaacaccgat |
1668051 |
T |
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| Q |
207 |
ccaaacgttcattccaccaac |
227 |
Q |
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| T |
1668050 |
ccaaacgttcattccaccaac |
1668030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 1671835 - 1671794
Alignment:
| Q |
190 |
gtacatttaacgccgatccaaacgttcattccaccaactcca |
231 |
Q |
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| T |
1671835 |
gtacttttaacaccgatccaaactttcattccaccaactcca |
1671794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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