View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_low_39 (Length: 217)
Name: NF3306_1D_low_39
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 9352204 - 9352319
Alignment:
| Q |
19 |
gaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccgttttcattgttacaatgacagattatagagtaactca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352204 |
gaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccattttcattgttacaatgacagattatagagtaactca |
9352303 |
T |
|
| Q |
119 |
ccaggtcaacattgaa |
134 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9352304 |
ccaggtcaacattgaa |
9352319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 9352319 - 9352366
Alignment:
| Q |
170 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352319 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtga |
9352366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 650207 - 650245
Alignment:
| Q |
19 |
gaaaagactcatcctagagttgcttatttatgtaagtgt |
57 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
650207 |
gaaaagactcatcctaaagttgcttatttatgtaagtgt |
650245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 426702 - 426665
Alignment:
| Q |
19 |
gaaaagactcatcctagagttgcttatttatgtaagtg |
56 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
426702 |
gaaaaaactcatcctagagttgcttatttatgtaagtg |
426665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 52596117 - 52596158
Alignment:
| Q |
19 |
gaaaagactcatcctagagttgcttatttatgtaagtgtttc |
60 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
52596117 |
gaaaagactcatcctagagttgcttatctctgtaagtatttc |
52596158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University