View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_44 (Length: 201)
Name: NF3306_1D_low_44
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 34731813 - 34731875
Alignment:
| Q |
120 |
ctcactttacaagttaaaagagattattacttgtcagaaaatctgattagtgaagttactagt |
182 |
Q |
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| T |
34731813 |
ctcactttacaagttaaaagagattattccttgtcagaaaatctgattagtgaagttactagt |
34731875 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 34731740 - 34731784
Alignment:
| Q |
16 |
acaccaaacgcagataaaagagatctcaaacttgttttgaggata |
60 |
Q |
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| T |
34731740 |
acaccaaacgcagataaaagagatctcaaacttgttttgaggata |
34731784 |
T |
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