View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_low_5 (Length: 445)
Name: NF3306_1D_low_5
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 22 - 445
Target Start/End: Complemental strand, 315321 - 314898
Alignment:
| Q |
22 |
attctttcatacatgcatagctctctaactagtgttttggttacgttgtagacggatagagtatacttgcacagcccaaataaaattgccatcatagatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
315321 |
attctttcatacatgcatagctctctaactagtgttttggttacgttgtagacggatagagtatacttgcacagcccaaataaaattgccatcatagatc |
315222 |
T |
|
| Q |
122 |
atgagaagaaaagaacttttgtactccagaagaattcacttccagatgcaggttactattagttatggattcacattttacatgttttctgtttcattca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
315221 |
atgagaagaaaagaacttttgtactccagaagaattcacttccagatgcaggttactattagttatggattcacattttacatgttttctgtttcattca |
315122 |
T |
|
| Q |
222 |
tttgatgtatttgcatgacattatatcaatttgtgatgagagtgcagtcgtatggaatccatggaataaaaaggcgaaagctctacctgatttgggagtt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
315121 |
tttgatgtatttgcatgacattatatcaatttgtgatgagagtgcagttgtatggaatccatggaataaaaaggcgaaagctctacctgatttgggagtt |
315022 |
T |
|
| Q |
322 |
gatgattacaaaatgatgttatgtgtgaattcagcagctattgatactcctattatcttgaaaccatgtgaagaatggaaaggttatcaagaaatttcaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
315021 |
gatgattacaaaatgatgttatgtgtgaattcagcagctattgatactcctattatcttgaaaccatgtgaagaatggaaaggttatcaagaaatttcaa |
314922 |
T |
|
| Q |
422 |
cggtttcatcaagctattgcagtg |
445 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
314921 |
ctgtttcatcaagctattgcagtg |
314898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University