View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_6 (Length: 411)
Name: NF3306_1D_low_6
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_6 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 2556614 - 2556205
Alignment:
| Q |
1 |
taataatgaagagtgaaatacgtaccgttggactaatgttgtagcgtgggtcaataattatgaagttcataacattactaaggatgacttgctcaaatgt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2556614 |
taataatgttgagtgaaatacgtaccgttggactaattttgtacccttggtcaataattattgggttcataacattactaaggatgacttgctcaaatgt |
2556515 |
T |
|
| Q |
101 |
aatctgtcttgcataacctgatccaccctgcataatcttataatttattacttataaattattactacgtaattatatgatttgaactgaaaaatggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
2556514 |
aatctgtcttgcataacctgatccaccctgcataatcttataatgtattacttataaattattactacgtaattatatgatctgaattgaaaaatggtta |
2556415 |
T |
|
| Q |
201 |
aaagttccaaaattataattagcaaagtagatgtgaaaatttataaataaataacttacacgacaaaaacagtagatgtgaacaagcataatttctcacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556414 |
aaagttccaaaattataattagcaaagtagatgtgaaaatttataaataaataatttacacgacaaaaacagtagatgtgaacaagcataatttctcacg |
2556315 |
T |
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| Q |
301 |
catagatatagtcgttatagttatattttaaatcgtaataatatttttaattttgaatttagtctctataatgcacaactactaaagacacattgatttg |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2556314 |
catagatatagtcgttctagttatattttaaatcgtaataatatttttaattttgaatttagtctctataatgcacaactactaaagacacattga-ttg |
2556216 |
T |
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| Q |
401 |
attttgtaaaa |
411 |
Q |
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||||||||||| |
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| T |
2556215 |
attttgtaaaa |
2556205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 411
Target Start/End: Complemental strand, 2566140 - 2565920
Alignment:
| Q |
200 |
aaaagttccaaaattataat---tagcaaagtagatgtgaaaatttataaataaataacttacacgacaaaaaca---gtagatgtgaacaagcataatt |
293 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||| | || || ||||||| | |||||||| ||||||||||||| |
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| T |
2566140 |
aaaagttccaaaattataataattagcaaagtagatgtgaaaatttataa-taatttttttttacaacaaaaaaaaaagtagatgtcaacaagcataatt |
2566042 |
T |
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| Q |
294 |
tctcacgcatagatatagtcgtta----tagttatattttaaatcgtaataatatttttaattttgaatttagtctctataatgcacaactactaaagac |
389 |
Q |
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||| ||||||| ||||| |||||| || ||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
2566041 |
tctaacgcataaatataatcgttagggttaaatatattttaaatcctaataaaattttaatttttgaatttagtctctataatgcacaactactaaagac |
2565942 |
T |
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| Q |
390 |
acattgatttgattttgtaaaa |
411 |
Q |
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| T |
2565941 |
acattgatttgattttgtaaaa |
2565920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2566471 - 2566340
Alignment:
| Q |
1 |
taataatgaagagtgaaatacgtaccgttggactaatgttgtagcgtgggtcaataattatgaagttcataacattactaaggatgacttgctcaaatgt |
100 |
Q |
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|||||||| ||||||||||| |||||||||||||||| ||||| | | |||| |||||||| |||| |||||||||||||||||| ||| |||||||| |
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| T |
2566471 |
taataatgtagagtgaaatatgtaccgttggactaattttgtatccttggtctataattattgggttcttaacattactaaggatgatttgttcaaatgt |
2566372 |
T |
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| Q |
101 |
aatctgtcttgcataacctgatccaccctgca |
132 |
Q |
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| T |
2566371 |
aatctgtcttgcataacctgatccaccctgca |
2566340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 1831661 - 1831583
Alignment:
| Q |
54 |
ataattatgaagttcataacattactaaggatgacttgctcaaatgtaatctgtcttgcataacctgatccaccctgca |
132 |
Q |
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| T |
1831661 |
ataattatggagttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgca |
1831583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 1866104 - 1866026
Alignment:
| Q |
54 |
ataattatgaagttcataacattactaaggatgacttgctcaaatgtaatctgtcttgcataacctgatccaccctgca |
132 |
Q |
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||||||||| ||||| |||||||| |||||| | ||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
1866104 |
ataattatggagttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgca |
1866026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 2543473 - 2543411
Alignment:
| Q |
70 |
taacattactaaggatgacttgctcaaatgtaatctgtcttgcataacctgatccaccctgca |
132 |
Q |
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| T |
2543473 |
taacattaacaaggatgatttgctcaaatgtaatatgttttgcataacctaatccaccctgca |
2543411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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