View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_1D_low_7 (Length: 405)

Name: NF3306_1D_low_7
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_1D_low_7
NF3306_1D_low_7
[»] scaffold0251 (1 HSPs)
scaffold0251 (5-380)||(2669-3040)
[»] chr5 (3 HSPs)
chr5 (5-380)||(13065876-13066246)
chr5 (14-380)||(8723973-8724335)
chr5 (161-201)||(42764733-42764773)
[»] chr7 (2 HSPs)
chr7 (1-336)||(13783178-13783509)
chr7 (326-379)||(33972360-33972413)
[»] chr3 (2 HSPs)
chr3 (14-380)||(15789306-15789668)
chr3 (146-190)||(34934606-34934650)
[»] chr4 (1 HSPs)
chr4 (142-378)||(20089593-20089829)
[»] chr8 (1 HSPs)
chr8 (142-311)||(7994512-7994681)
[»] chr2 (2 HSPs)
chr2 (161-201)||(27071816-27071856)
chr2 (146-198)||(31425906-31425958)
[»] chr1 (2 HSPs)
chr1 (326-378)||(25595563-25595615)
chr1 (152-216)||(36077658-36077722)


Alignment Details
Target: scaffold0251 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 2669 - 3040
Alignment:
Q  5 tgtgattgtgaggaagagtggtagcaatgttactttgatttgtcggattttgcttacgattagcacttctccaacctcctaaaagatggataactcttac 104  Q
    |||||||| |||||||||||||| |||||| ||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  2669 tgtgattgcgaggaagagtggtatcaatgtgactatgattagacggattttgcttacgattagcacttctccaaccttctaaaagatggatagctcttac 2768  T
Q  105 catgattgtcgtgggtgagtctgtcacttgttacttaccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctctatctg 204  Q
    ||||||||| || | ||| ||||||||||||| |    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2769 catgattgttgtcgttgaatctgtcacttgttgc----cacaacttaaggtttctagctttccagatactccaaataatagtgacaatattctctatctg 2864  T
Q  205 ggttgtagacaatattcgcaacaaatggaatatgatatctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgcattc 304  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  2865 ggttgtagacaatattctcaacaaatggaatataatatctgatgtattatcaaacaggaccaaagatggagatatcaggtgccaaacattagccgcattc 2964  T
Q  305 caaacattgacagccgccttacaatgaaacaaaatatgataactgtcttcatggggatcttgacacataacacaat 380  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  2965 cacacatcgacagccgccttacaatgaaacaaaatatgataactgtcttcatgtggatcttcacacataacacaat 3040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 13065876 - 13066246
Alignment:
Q  5 tgtgattgtgaggaagagtggtagcaatgttactttgatttgtcggattttgcttacgattagcacttctccaacctcctaaaagatggataactcttac 104  Q
    |||||||| |||||||||||||| |||||| ||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  13065876 tgtgattgcgaggaagagtggtatcaatgtgactatgattagacggattttgcttacgattagcacttctccaaccttctaaaagatggatagctcttac 13065975  T
Q  105 catgattgtcgtgggtgagtctgtcacttgttacttaccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctctatctg 204  Q
    ||||||||| |||| ||| ||||||||||||| |    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  13065976 catgattgttgtggttgaatctgtcacttgttgc----cacaacttaaggtttctagctttccagatactccaaataatagtgacaatattctctatttg 13066071  T
Q  205 ggttgtagacaatattcgcaacaaatggaatatgatatctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgcattc 304  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  13066072 ggttgtagacaatattctcaacaaatggaatataatatctgatgcattatcaaacaggaccaaagatggagatatcaggtgccaaacattagccgcattc 13066171  T
Q  305 caaacattgacagccgccttacaatgaaacaaaatatgataactgtcttcatggggatcttgacacataacacaat 380  Q
    ||||||| |||||| |||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  13066172 caaacatcgacagctgccttacagtgaaacaaaatatgataattgtcttcat-gggatcttcacacataacacaat 13066246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 380
Target Start/End: Complemental strand, 8724335 - 8723973
Alignment:
Q  14 gaggaagagtggtagcaatgttactttgatttgtcggattttgcttacgattagcacttctccaacctcctaaaagatggataactcttaccatgattgt 113  Q
    ||||||| |||||| |||||| ||||||||| |  |||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||    
T  8724335 gaggaagggtggtatcaatgtgactttgattaggaggattttgtttacgattagcacttctccaaccttctaaaagatgggtagctcttaccaagattgt 8724236  T
Q  114 cgtgggtgagtctgtcacttgttacttaccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctctatctgggttgtaga 213  Q
     |||||||| ||||||||||||| |    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8724235 tgtgggtgaatctgtcacttgttgc----cacaacttaaggttcctagctttccagatactccatatagtagtgacaatattctctatctgggttgtaga 8724140  T
Q  214 caatattcgcaacaaatggaatatgatatctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgcattccaaacattg 313  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| |    
T  8724139 caatattttcaacaaatggaatataatatctgatgcattatcaaacaggtccaaagatggagatatcagatgccaaacattagccgcattccaaacatcg 8724040  T
Q  314 acagccgccttacaatgaaacaaaatatgataactgtcttcatggggatcttgacacataacacaat 380  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  8724039 acagccgccttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaat 8723973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 42764773 - 42764733
Alignment:
Q  161 gctttccagatactccatataatagtgacaatattctctat 201  Q
    |||||||| |||||||| |||||||| ||||||||||||||    
T  42764773 gctttccatatactccacataatagtaacaatattctctat 42764733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 13783509 - 13783178
Alignment:
Q  1 ttattgtgattgtgaggaagagtggtagcaatgttactttgatttgtcggattttgcttacgattagcacttctccaacctcctaaaagatggataactc 100  Q
    |||||||||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  13783509 ttattgtgattgcgaggaagagtggtatcaatgtgactttgattagacggattttgcttacgattagcacttctccaaccttctaaaagatggatagctc 13783410  T
Q  101 ttaccatgattgtcgtgggtgagtctgtcacttgttacttaccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctcta 200  Q
    ||||||| ||||| |||||||| ||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13783409 ttaccatcattgttgtgggtgaatctgtcacttgttgc----cacaacttaaggtttctagctttccagatactccatataatagtgacaatattctcta 13783314  T
Q  201 tctgggttgtagacaatattcgcaacaaatggaatatgatatctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgc 300  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  13783313 tctgggttgtagacaatattctcaacaaatggaatataatatctgatgcattatcaaacaggtccaaagatggagatatcaggtgccaaacattagccgc 13783214  T
Q  301 attccaaacattgacagccgccttacaatgaaacaa 336  Q
    ||||||||||| ||||||||||||||| ||||||||    
T  13783213 attccaaacatcgacagccgccttacagtgaaacaa 13783178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 33972413 - 33972360
Alignment:
Q  326 caatgaaacaaaatatgataactgtcttcatggggatcttgacacataacacaa 379  Q
    |||||||| | |||||||||||| ||||||||||| |||| |||| ||||||||    
T  33972413 caatgaaagagaatatgataactatcttcatgggggtcttcacacctaacacaa 33972360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 380
Target Start/End: Complemental strand, 15789668 - 15789306
Alignment:
Q  14 gaggaagagtggtagcaatgttactttgatttgtcggattttgcttacgattagcacttctccaacctcctaaaagatggataactcttaccatgattgt 113  Q
    ||||||| |||||| |||||| ||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||    
T  15789668 gaggaagggtggtatcaatgtgactttgattaggcggattttgtttacgattagcacttctccaaccttctaaaagatgggtagctcttaccaagattgt 15789569  T
Q  114 cgtgggtgagtctgtcacttgttacttaccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctctatctgggttgtaga 213  Q
     |||||||| ||||||||||||| |    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15789568 tgtgggtgaatctgtcacttgttgc----cacaacttaaggttcctagctttccagatactccatatagtagtgacaatattctctatctgggttgtaga 15789473  T
Q  214 caatattcgcaacaaatggaatatgatatctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgcattccaaacattg 313  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||||||| |    
T  15789472 caatattttcaacaaatggaatataatatctgatgcattatcaaacaggtccaaagatggagagatcagatgccaaacattagccgcattccaaacatcg 15789373  T
Q  314 acagccgccttacaatgaaacaaaatatgataactgtcttcatggggatcttgacacataacacaat 380  Q
    ||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  15789372 acaaccgccttacagtgaaacaagatatgataactgtcttcatggggatcttcacacataacacaat 15789306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 34934650 - 34934606
Alignment:
Q  146 aacttaaggtttctagctttccagatactccatataatagtgaca 190  Q
    ||||| |||||||||||||||||||| ||||| || |||||||||    
T  34934650 aacttgaggtttctagctttccagatgctccacatgatagtgaca 34934606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 142 - 378
Target Start/End: Original strand, 20089593 - 20089829
Alignment:
Q  142 ccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctctatctgggttgtagacaatattcgcaacaaatggaatatgata 241  Q
    |||||| ||||||||||||||||||||||||||||| || || || |||||| ||||  | ||||  ||||||||  || | |||| ||  |||||||||    
T  20089593 ccacaaattaaggtttctagctttccagatactccacattatggtaacaatagtctcagtttgggcagtagacaacttttgtaacagattaaatatgata 20089692  T
Q  242 tctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgcattccaaacattgacagccgccttacaatgaaacaaaatat 341  Q
    | |||||||||||||||| | | || ||||||||| |  |||||| ||||||||||||||||||||||||  |  |||||||| |||| ||| |  ||||    
T  20089693 tatgatgcattatcaaactgattcagagatggagagatcaggtgctaaacattagccgcattccaaacatcaatggccgccttgcaataaaagagcatat 20089792  T
Q  342 gataactgtcttcatggggatcttgacacataacaca 378  Q
    ||||  | ||||||| ||| |||| ||||||||||||    
T  20089793 gatagttatcttcataggggtcttcacacataacaca 20089829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 7994681 - 7994512
Alignment:
Q  142 ccacaacttaaggtttctagctttccagatactccatataatagtgacaatattctctatctgggttgtagacaatattcgcaacaaatggaatatgata 241  Q
    |||||| ||||||||||||||||||||||||||||| || || || |||||| |||| |||||||||||||| |   || |||| | ||  |||||||||    
T  7994681 ccacaatttaaggtttctagctttccagatactccacattatggtaacaatagtctcgatctgggttgtagatagcttttgcaaaagattaaatatgata 7994582  T
Q  242 tctgatgcattatcaaacaggtccaaagatggagatacgaggtgccaaacattagccgcattccaaacat 311  Q
    || | ||||||||||||  | | || ||||||||| |  |||||||||||||| |||  |||||||||||    
T  7994581 tcgggtgcattatcaaattgattcagagatggagaaatcaggtgccaaacattggccatattccaaacat 7994512  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 27071856 - 27071816
Alignment:
Q  161 gctttccagatactccatataatagtgacaatattctctat 201  Q
    |||||||| |||||||| |||||||| ||||||||||||||    
T  27071856 gctttccatatactccacataatagtaacaatattctctat 27071816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 31425958 - 31425906
Alignment:
Q  146 aacttaaggtttctagctttccagatactccatataatagtgacaatattctc 198  Q
    ||||||||||| || || ||||| |||||||| || |||||||||||||||||    
T  31425958 aacttaaggttcctggccttccaaatactccacattatagtgacaatattctc 31425906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 25595563 - 25595615
Alignment:
Q  326 caatgaaacaaaatatgataactgtcttcatggggatcttgacacataacaca 378  Q
    ||||||||||| | ||||||||| ||||| |||||||| | ||||||||||||    
T  25595563 caatgaaacaacaaatgataactatcttcgtggggatcctcacacataacaca 25595615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 36077722 - 36077658
Alignment:
Q  152 aggtttctagctttccagatactccatataatagtgacaatattctctatctgggttgtagacaa 216  Q
    |||||| |||||||||| || ||||| || || ||||||||| |||| ||||| |||||||||||    
T  36077722 aggtttatagctttccaaatgctccacattatggtgacaatagtctcgatctgagttgtagacaa 36077658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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