View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_low_8 (Length: 372)
Name: NF3306_1D_low_8
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 35071822 - 35072156
Alignment:
| Q |
30 |
aacttttcataattactctcactgtgaactctgattggtcaaacgatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttca |
129 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071822 |
aactgttcattattactctcactgtgaactctgattggtcaaacgatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttca |
35071921 |
T |
|
| Q |
130 |
atagaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071922 |
atagaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttg |
35072021 |
T |
|
| Q |
230 |
tatcttgtctctccatgctcctccctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagc |
329 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072022 |
tatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagc |
35072121 |
T |
|
| Q |
330 |
tttgaatacatgggcttctggagtttccttccaat |
364 |
Q |
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| T |
35072122 |
tttgaatacatgggcttctggagtttccttccaat |
35072156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 364
Target Start/End: Original strand, 35072805 - 35072996
Alignment:
| Q |
173 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctccctcctgttatctgaagcac |
272 |
Q |
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| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
|
| Q |
273 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaat |
364 |
Q |
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| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaat |
35072996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 364
Target Start/End: Complemental strand, 35107055 - 35106864
Alignment:
| Q |
173 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctccctcctgttatctgaagcac |
272 |
Q |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||| | || |||||||||| || |
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| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
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| Q |
273 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaat |
364 |
Q |
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| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaat |
35106864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
91 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
156 |
Q |
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||||||||||| ||||||||||||||||| |||| || ||| ||| ||||||||||||| |||| |
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| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
278 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
359 |
Q |
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||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 24014391 - 24014495
Alignment:
| Q |
260 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
359 |
Q |
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|||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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| T |
24014391 |
ttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctcctt |
24014490 |
T |
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| Q |
360 |
ccaat |
364 |
Q |
| |
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||||| |
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|
| T |
24014491 |
ccaat |
24014495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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