View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_high_12 (Length: 253)
Name: NF3306_2D_high_12
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 29319642 - 29319869
Alignment:
| Q |
7 |
ttggtgttacactgttatgaattagttgtgtatcatttacatattaattatannnnnnnatcaaataatttagtggttgaactcacacacatttagtgaa |
106 |
Q |
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| T |
29319642 |
ttggtgttacactgttatgaattagttgtgtatcatttacatattaa--aattttttttattaaataatttagtggttgaactcacacacatttagtgaa |
29319739 |
T |
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| Q |
107 |
gaatctggagttcaaattttaacttctacatattaattattttatttcagaaaaatgaatgaagtttattttaaaggacaaaagtaaatggta-nnnnnn |
205 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319740 |
gaatctggagttcaaactttaacttctacatattaattattttatttcagaaaaatgaatgaagtttattttaaaggacaaaagtaaatggtattttttt |
29319839 |
T |
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| Q |
206 |
nnaaggataaaataagtaaaagtaaatggt |
235 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29319840 |
ttaaggataaaataagtaaaagtaaatggt |
29319869 |
T |
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