View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_high_14 (Length: 223)
Name: NF3306_2D_high_14
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_high_14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1628855 - 1629077
Alignment:
| Q |
1 |
tactgtggcgttagcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaact |
100 |
Q |
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| T |
1628855 |
tactgtggcgttagcaactactcattggtttggtgtccacctcaagtgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaact |
1628954 |
T |
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| Q |
101 |
gccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
1628955 |
gccacaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaagatgcttatttgttacttagtttctgac |
1629054 |
T |
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| Q |
201 |
atattgactttttagacatagat |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
1629055 |
atattgactttttaaacatagat |
1629077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 10821778 - 10821569
Alignment:
| Q |
8 |
gcgttagcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccaaag |
107 |
Q |
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|||||||||||| || |||||||| | ||||||||| | |||||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |
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| T |
10821778 |
gcgttagcaactcatccttggtttgctatgcacctcatgtgtttccttctgcgcctagcgcgtgctgatgagatatcaaggagatgagcaactgtcacgc |
10821679 |
T |
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| Q |
108 |
gcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattga |
207 |
Q |
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| T |
10821678 |
gcgacgcatggcctcatgcgcctcgcgcataggactt--ttctat-tttttttttaaaattacaagattcttatttgttacatagtttatgatatattga |
10821582 |
T |
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| Q |
208 |
ctttttagacata |
220 |
Q |
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| T |
10821581 |
ctttttaaacata |
10821569 |
T |
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