View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_2D_high_2 (Length: 695)
Name: NF3306_2D_high_2
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 45553780 - 45553312
Alignment:
| Q |
1 |
agggaaagggtggtttttgatgcaactgtggccgataattgcgttggtggggtcgttttggagattcaatatgaaccgttggatgtgaagnnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45553780 |
agggaaagggtggtttttgatgcaactgtggccgataattgcgttggtggggtcgttttggagattcaatatgaaccgttggatgtgaagtttttatttt |
45553681 |
T |
|
| Q |
101 |
nnaattaaattattaatacatggaaattggaaatttgtgataattaaagattaaaaataggaaaagtgacagctgtataacacggggttttgattctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45553680 |
ttaattaaattattaatacatggaaattggaaatttgtgataattaaagattaaaaatagtaaaattgacagctgtataacacggggttttgattctctt |
45553581 |
T |
|
| Q |
201 |
gtgtattgtgtggcggaaattatggtgtctctctgtcatttgtttgtgaaccgggaatagggttcgtttttgttggtttgaaaagtttcaactttgggta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45553580 |
gtgtattgtgtggcggaaattatggtgtctccctgtcatttgtttgtgaaccgggaatagggttcgtttttgttggtttgaaaagtttcaactttgggta |
45553481 |
T |
|
| Q |
301 |
tga---------accaaaaaggttaccgatttcttttggaaaaaggttatcaaatcaaatgaacaataatgatgaatttggaaagtaaagtgaatggggt |
391 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45553480 |
tgaaccatttgaaccaaaaaggttaccgatttcttttggaaaaaggttatcaaatcaaatgaataataatgatgaatttggaaagtaaagtgaatggggt |
45553381 |
T |
|
| Q |
392 |
taagttggttgttaatggggacatttggatattggattcgactatccattgcttgggcccttaacagtg |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45553380 |
taagttggttgttaatggggacatttggatattggattcgactatccattgcttgggcccttaacagtg |
45553312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 495 - 695
Target Start/End: Complemental strand, 45553277 - 45553064
Alignment:
| Q |
495 |
gttggtccaagttaattaagatcaattaaattggtggcagggtaggtcatagtaggcactag-----------tagattctgnnnnnnnn--tctgacaa |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
45553277 |
gttggtccaagttaattaagatcaattaaattggtggcagggtaggtcatagtaggcactaggcaggcactagtagattctgaaaaataaaatctgacaa |
45553178 |
T |
|
| Q |
582 |
acctgttactgcaattggcaacagcatttcaaaaccatgaaaccacaaatttacttcttgtcttccaagacccgaattcaatcaacattgtaaacttgta |
681 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45553177 |
acctgttactgcaattggtaacagcatttcaaaaccatgaaaccacaaatttacttcttgtcttccaagacccgaattcaatcaacattgtaaacttgta |
45553078 |
T |
|
| Q |
682 |
aatagaattttcaa |
695 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45553077 |
aatagaattttcaa |
45553064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University