View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_high_7 (Length: 378)
Name: NF3306_2D_high_7
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 6488357 - 6488699
Alignment:
| Q |
16 |
acatcatccacttgactctttttatcttttttaatcacaccctcctttcttttagctaccacattcttcttttcacccttatttatacatctccttctaa |
115 |
Q |
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| T |
6488357 |
acatcatccacttgactctttttatcttttttaatcacaccctcctttcttttagctaccacattcttcttttcacccctatttatacatctccttctaa |
6488456 |
T |
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| Q |
116 |
ttcattctcacttcacaagcatacacatttttgttgtatctcattacattaacaaaagtaactggttttttcattcatcatatcaaaacatatatcttct |
215 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
6488457 |
ttcattcttacttcacaagcatacacatttt-gttgtatctcattacattaacaaaagtatctggtttttt-attcatcatatcaaaacatatatcttct |
6488554 |
T |
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| Q |
216 |
tatttatatcatataaatcatctttgaccggttgatggccaccagagttatcccaccaagaatcctaaggaaactccgttacaacactgccacaaaaccg |
315 |
Q |
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| T |
6488555 |
tgtttatatcatataaatcatctttgaccggttgatggccaccagagttatcccaccaagaatcctaaggaaactccgttacaacactgccacaaaaccg |
6488654 |
T |
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| Q |
316 |
ttccaacctgccctcacctcgcccgctgtcgctcctgcgtctaat |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488655 |
ttccaacctgccctcacctcgcccgctgtcgctcctgcgtctaat |
6488699 |
T |
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