View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_12 (Length: 430)
Name: NF3306_2D_low_12
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 42518074 - 42517777
Alignment:
| Q |
20 |
catgcaactaattattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaacc |
119 |
Q |
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| T |
42518074 |
catgcaactaattattaaaagacaattttaagtatatgattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaacc |
42517975 |
T |
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| Q |
120 |
aacttaatcacactgattgcctaaagactaataagtaatcctcgatttggtaattgaaagaaaaatcaagtgattgaatttatatatataaaattattgt |
219 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42517974 |
aacttaatcacaccgattgcctaaagactaataagtaatcctcgaattggtaattgaaagaaaaatcaagtgattgaatttatatatatagaattattgt |
42517875 |
T |
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| Q |
220 |
catacaaaagaggaattcatagtaaatgaatttgagccatat--------gccaaattccttagaacagtactttacaattagctaagctatgaaggt |
309 |
Q |
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| T |
42517874 |
catacaggagaggaattcatagcaaatgaatttgggccatatacctagggccctaaatccttggaacagtactttacaactagctaagctatgaaggt |
42517777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 170 - 418
Target Start/End: Complemental strand, 42524509 - 42524261
Alignment:
| Q |
170 |
taattgaaagaaaaatcaagtgattgaatttatatatataaaattattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaatt |
269 |
Q |
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| T |
42524509 |
taattgaaagaaaaatcaactaattgaatttatatatataaaatttttgtcatacagcagaggaattcgtagtaaatgaatttgagccatatgccaaatt |
42524410 |
T |
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| Q |
270 |
ccttagaacagtactttacaattagctaagctatgaaggtgataaaataacaaatcttgtgtgttcaacatctcatctacatggttgctttcatgcccaa |
369 |
Q |
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| T |
42524409 |
ccttagaacagtactttacaactagctaagctatgaaggtaataaaataacaaatcttgtgtgttcatcctctcatctacatggttgctttcatgcccaa |
42524310 |
T |
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| Q |
370 |
cgaagtttttccagttatgcaatggattcgagcttccatcttcatttca |
418 |
Q |
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| T |
42524309 |
cgaagttttttcagttatgcaatggatttgagcttccatcttcagttca |
42524261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 170 - 418
Target Start/End: Complemental strand, 42508395 - 42508145
Alignment:
| Q |
170 |
taattgaaagaaaaatcaagtgattgaatttatatatataaa--attattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaa |
267 |
Q |
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| T |
42508395 |
taattgaaagaaaaatcaactaagtgaatttatatatatatataattattgtcatacagaagaggaattcatagtaaatgaatttgagccatatgccaaa |
42508296 |
T |
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| Q |
268 |
ttccttagaacagtactttacaattagctaagctatgaaggtgataaaataacaaatcttgtgtgttcaacatctcatctacatggttgctttcatgccc |
367 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
42508295 |
ttccttagaacaatactttacaactagctaagctatgaaggtgataaaataacaaatcttgtgtgttcatcctctcatctacatagttgctttcatgccc |
42508196 |
T |
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| Q |
368 |
aacgaagtttttccagttatgcaatggattcgagcttccatcttcatttca |
418 |
Q |
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| T |
42508195 |
aacgaagttttttcagttatgcaatggatttgagcttccatcttcagttca |
42508145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 42517682 - 42517606
Alignment:
| Q |
342 |
tcatctacatggttgctttcatgcccaacgaagtttttccagttatgcaatggattcgagcttccatcttcatttca |
418 |
Q |
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| T |
42517682 |
tcatctacatagttgctttcatgcccaacaaagttttttcagttatgcaatggatttgagcttccatcttcagttca |
42517606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 42524602 - 42524506
Alignment:
| Q |
30 |
attattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaaccaacttaat |
127 |
Q |
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| T |
42524602 |
attattaagagacaatttga-gtatattatttagaaaaattagataatgtgtagttgagttagactcacataagctccttatgtgcaaccaacttaat |
42524506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 42508496 - 42508423
Alignment:
| Q |
30 |
attattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagc |
104 |
Q |
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|||||||| ||||||||| | |||||| ||| |||||||| ||||||| | |||||||| ||||||||||||||| |
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| T |
42508496 |
attattaagagacaatttga-gtatattatttagaaaaattagataatgtgtagttgagttagactcacataagc |
42508423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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