View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_13 (Length: 425)
Name: NF3306_2D_low_13
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 2311023 - 2310608
Alignment:
| Q |
1 |
gtaaatcaaattattaagcaaacagattcaaatagatggtcacacaacatcaaggtgttttttattccccaacatatgtggggcatctgctaggtagtta |
100 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2311023 |
gtaaatcaaattatcaagcaaatagattcaaatagatggtcacacaacatcaaggtgttttttattccccaacaaatgtggggcatctgctaggtagtta |
2310924 |
T |
|
| Q |
101 |
aattcaaaattaataaaacagaattccaaaaatgataaaatatgaaatgcaa----------gcaaacagcttcagatcacagcttctcttcatcctcgc |
190 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
2310923 |
aattcaaa-ttaataaaacagaatttcaaaaatgataaaatatgaaatgcaacatggtagtagcaaccagcttcagatcacagcttctcttcaccctcct |
2310825 |
T |
|
| Q |
191 |
caactgcaaaagtaagataaaatttataaaacttctattctatgttcgcctgccaattacagatatgcaaaaacgtatatgcaaagctacttcttggtgg |
290 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2310824 |
catctgcaaaagtaagataaaatttataaaacttctattctatgtccccctggcaattacagatatgcaaaaacgtatatgcaaagctacttcttggtgg |
2310725 |
T |
|
| Q |
291 |
tttaaattttcaaataaataaacattgatcgcaagtaattgaaaagagagaaatgagaaaagtcaaaagagctctaaccaaggttagcttgaacggcctt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||| |
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| T |
2310724 |
tttaaattttcaaataaataaacattgatcgcaagtaattgaaaagagagaaatgagaaaagtcaaaatagctctaaccaagggcagatttaacggcctt |
2310625 |
T |
|
| Q |
391 |
gcctgctgccttaatag |
407 |
Q |
| |
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||||| |||||||| |
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| T |
2310624 |
ctgtgctgtcttaatag |
2310608 |
T |
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