View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_17 (Length: 341)
Name: NF3306_2D_low_17
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 24865473 - 24865133
Alignment:
| Q |
1 |
attatattaaatgcatgttggagtacttaagtagcttagttcttccccaggacagctaacttctgaatgttttccaagtgtgtgggtgcttgacaaatag |
100 |
Q |
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| T |
24865473 |
attatattgaatgcatgttggagtacttaagtagcttagttcttccccaggacagctaacttctgaatgttttccaagtgtgtgggtgcttaacaaatag |
24865374 |
T |
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| Q |
101 |
tactgaatctggttgcaaatgtctcgtaaacgttacctacaaaggggctaactgaaagaaacaaaagaacacaagtgctgtatggtacagttgcgctatg |
200 |
Q |
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| T |
24865373 |
tactgaatctggttgcaaatgtctcgtaaacgttacctacaaaggggctaactgaaagaaacaaaaaaacacaagtgctgtatggtacagttgcgctatg |
24865274 |
T |
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| Q |
201 |
atttgagatcattccctattttggatggatatagttcttcacgtgtaattcattatggattcattttacgatatttataaagtgttatgcttgattttca |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24865273 |
atttgagatcattccctattttgggtggatatagttcttcacgtgtaattcattatggattcattttacgatatttataaagtgttatgcttgattttca |
24865174 |
T |
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| Q |
301 |
aatattttcataaccatgaagtttttaaaggatgcaacttt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
24865173 |
aatattttcataaccatgaagtttttaaaggatgcaacttt |
24865133 |
T |
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