View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_2D_low_2 (Length: 1235)

Name: NF3306_2D_low_2
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_2D_low_2
NF3306_2D_low_2
[»] chr3 (35 HSPs)
chr3 (116-556)||(6938652-6939125)
chr3 (1129-1224)||(6942439-6942534)
chr3 (319-489)||(6549838-6550030)
chr3 (751-1030)||(6526105-6526375)
chr3 (159-309)||(6796828-6796992)
chr3 (832-1030)||(6842883-6843082)
chr3 (240-349)||(6527250-6527364)
chr3 (240-349)||(6848831-6848945)
chr3 (56-156)||(6789268-6789370)
chr3 (561-661)||(6557680-6557781)
chr3 (62-153)||(6558718-6558809)
chr3 (643-715)||(6788466-6788538)
chr3 (406-489)||(6796616-6796700)
chr3 (896-999)||(6940571-6940674)
chr3 (986-1031)||(8572267-8572312)
chr3 (1078-1143)||(6788244-6788313)
chr3 (502-553)||(6549732-6549783)
chr3 (730-780)||(6788422-6788472)
chr3 (689-775)||(6549138-6549225)
chr3 (596-668)||(6549222-6549295)
chr3 (987-1058)||(6943817-6943891)
chr3 (157-200)||(6527396-6527439)
chr3 (561-667)||(6848006-6848113)
chr3 (157-200)||(6848977-6849020)
chr3 (914-967)||(6943756-6943809)
chr3 (205-237)||(6410959-6410991)
chr3 (54-118)||(6785573-6785637)
chr3 (584-634)||(6526460-6526510)
chr3 (1038-1080)||(6548972-6549014)
chr3 (402-443)||(6482846-6482887)
chr3 (167-200)||(6558662-6558695)
chr3 (566-607)||(6788534-6788575)
chr3 (20-49)||(36402331-36402360)
chr3 (20-49)||(39353731-39353760)
chr3 (20-49)||(41182501-41182530)
[»] scaffold0425 (4 HSPs)
scaffold0425 (883-1030)||(10974-11122)
scaffold0425 (242-309)||(11977-12048)
scaffold0425 (157-200)||(12082-12125)
scaffold0425 (584-634)||(11167-11217)
[»] chr5 (11 HSPs)
chr5 (19-49)||(26279655-26279685)
chr5 (20-49)||(3557223-3557252)
chr5 (20-49)||(8298758-8298787)
chr5 (20-49)||(9714805-9714834)
chr5 (20-49)||(12724275-12724304)
chr5 (20-49)||(12785758-12785787)
chr5 (20-49)||(13821592-13821621)
chr5 (20-49)||(18809571-18809600)
chr5 (20-49)||(20337000-20337029)
chr5 (20-49)||(27114904-27114933)
chr5 (20-49)||(38678970-38678999)
[»] chr8 (3 HSPs)
chr8 (20-49)||(6347913-6347942)
chr8 (20-49)||(32338431-32338460)
chr8 (20-49)||(39259810-39259839)
[»] chr7 (1 HSPs)
chr7 (20-49)||(44866639-44866668)
[»] chr6 (3 HSPs)
chr6 (20-49)||(11975586-11975615)
chr6 (20-49)||(16395921-16395950)
chr6 (20-49)||(31319149-31319178)
[»] chr4 (6 HSPs)
chr4 (20-49)||(6964074-6964103)
chr4 (20-49)||(16024466-16024495)
chr4 (20-49)||(28780280-28780309)
chr4 (20-49)||(33281686-33281715)
chr4 (20-49)||(45925192-45925221)
chr4 (20-49)||(52502009-52502038)
[»] chr2 (7 HSPs)
chr2 (20-49)||(1115704-1115733)
chr2 (20-49)||(13279287-13279316)
chr2 (20-49)||(15912311-15912340)
chr2 (20-49)||(17137210-17137239)
chr2 (20-49)||(38208932-38208961)
chr2 (20-49)||(38703093-38703122)
chr2 (20-49)||(44760647-44760676)
[»] chr1 (8 HSPs)
chr1 (20-49)||(12700060-12700089)
chr1 (20-49)||(14586844-14586873)
chr1 (20-49)||(22859271-22859300)
chr1 (20-49)||(27217422-27217451)
chr1 (20-49)||(29961998-29962027)
chr1 (20-49)||(33801932-33801961)
chr1 (20-49)||(50261482-50261511)
chr1 (20-49)||(52631852-52631881)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 116 - 556
Target Start/End: Original strand, 6938652 - 6939125
Alignment:
Q  116 tacgccaatgaactgttgtggctttttgatcagcacagcag------ctaattatgcagatagataaacttattcacaaactgagaaaaagaaatcagaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6938652 tacgccaatgaactgttgtggctttttgatcagcacagcagaaccttctaattatgcagatagataaacttattcacaaactgagaaaaagaaatcagaa 6938751  T
Q  210 tttagttatgatttgttgatagttttattgaaagtagttttttattgaatttaaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa 309  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6938752 tttagttatgatttgttgatagttttattgacagtagtgttttattgaatttaaattgacaagtcgaattccggtgtatgaactacgaaggacatacaaa 6938851  T
Q  310 -agtaagaagttgaagtagctgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattct---------------------ctgatactc 387  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||    
T  6938852 gagtaagaagttgaagtagctgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctgactgaaacaaactttgtcctgatactc 6938951  T
Q  388 ggtttccttcattcagctgtccatttccatcaaagtctgctgtctcatcattcctactgcat-aattagagtgatgccttgcagaatggttctgtgttac 486  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  6938952 ggtttccttcattcagctgtccgtttccatcaaagtctgctgtctcatcattcctactgcataaattagagtgatgccttccagaatggttctgtgttac 6939051  T
Q  487 ----attgattataacaggccagtcttattgatgcatcggctactcattctaatgaagaaaagatggagccacc 556  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939052 attgattgattataacaggccagtcttattgatgcatcggctactcattctaatgaagaaaagatggagccacc 6939125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 1129 - 1224
Target Start/End: Original strand, 6942439 - 6942534
Alignment:
Q  1129 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacaccaaact 1224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6942439 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaact 6942534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 319 - 489
Target Start/End: Complemental strand, 6550030 - 6549838
Alignment:
Q  319 ttgaagtagctgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctga---------------------tactcggtttccttc 397  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||                     | |||||||||||||    
T  6550030 ttgaagtggatgcctgagtcctgacatcacaaaatgcacacctctcgacaatgatattctctgactgaaacaaactttgtcctgctgctcggtttccttc 6549931  T
Q  398 attcagctgtccatttccatcaaagtctgctgtctcatcattcctactgcat-aattagagtgatgccttgcagaatggttctgtgttacatt 489  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||  |||||||||||||||||||||||||||||    
T  6549930 attcagctgtccgtttccatcaaagtctgctgtctcatcattcctaatgcataaattggagtagtgccttgcagaatggttctgtgttacatt 6549838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 751 - 1030
Target Start/End: Complemental strand, 6526375 - 6526105
Alignment:
Q  751 atctactcagttaagtgtagcctaacaatgcagag----cttaccattgtaagtactatctttgaaagcaatgagcaactctgtcacatattatgccttt 846  Q
    ||||||||||||||||||| ||||| ||||| |||    |||||||||||||||| ||||||||||||              || |||| ||||||||||    
T  6526375 atctactcagttaagtgtaacctaagaatgctgagagcacttaccattgtaagtaatatctttgaaag--------------gtaacatgttatgccttt 6526290  T
Q  847 aaatgtgtaagatcaactccctacctttctccaattcttgatgcagaaatgtctcaatggctttaactattatgccacccacctgcatttttcaaagtaa 946  Q
     |||||| ||||||||||||||  | | || ||   |||||||||||| |||||||| |  | ||| |||||||||| |||  || ||||||||||||||    
T  6526289 gaatgtgcaagatcaactccctggcatccttcagcccttgatgcagaactgtctcaaagaatataattattatgccatccagttgaatttttcaaagtaa 6526190  T
Q  947 actacatttcatgattcaa-tcggtataataataaagattttaatacaactttatttgaaagaagccctcataagtcacaacctt 1030  Q
    | |||||||||| |||||| || |||  ||||||||  ||||||||||||||||||||||||| |||||| || |||||||||||    
T  6526189 aatacatttcataattcaaatcagtactataataaaagttttaatacaactttatttgaaagatgccctcttaggtcacaacctt 6526105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 159 - 309
Target Start/End: Complemental strand, 6796992 - 6796828
Alignment:
Q  159 aattatgcagatagataaacttattcacaaactgagaaaaagaaat----------cagaatttagttatgatttgttgatagttttattgaaagtagtt 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||          |||||||||||||||||||||| ||||||||||| || |||||     
T  6796992 aattatgcagatagataagcttattcacaaactgagaaaaagaaatgatttccaaccagaatttagttatgatttgttcatagttttattaaacgtagtg 6796893  T
Q  249 ttttattgaatt----taaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa 309  Q
    ||||||||||||    |||| ||||| ||||| ||||||| ||||||||| |||| |||||||||    
T  6796892 ttttattgaatttcactaaactgacacgtcaacttccggtgtatgaactaggaagaacatacaaa 6796828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 832 - 1030
Target Start/End: Complemental strand, 6843082 - 6842883
Alignment:
Q  832 acatattatgcctttaaatgtgtaagatcaactccctacctttctccaattcttgatgcagaaatgtctcaatggctttaactattatgccacccacctg 931  Q
    |||| |||||||||| |||||| ||||||||||||||  | | || ||   |||||||||||| |||||||| |  | ||| ||||||| || |||  ||    
T  6843082 acatgttatgcctttgaatgtgcaagatcaactccctggcatccttcagcccttgatgcagaactgtctcaaagaatataattattatgtcatccagttg 6842983  T
Q  932 catttttcaaagtaaactacatttcatgattcaa-tcggtataataataaagattttaatacaactttatttgaaagaagccctcataagtcacaacctt 1030  Q
     ||||||||||||||| |||||||||| |||||| || |||  ||||||||  ||||||||||||||||||||||||| | |||| || |||||||||||    
T  6842982 aatttttcaaagtaaaatacatttcataattcaaatcagtactataataaaagttttaatacaactttatttgaaagacgacctcttaggtcacaacctt 6842883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 6527364 - 6527250
Alignment:
Q  240 aaagtagttttttattgaattt----aaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa-agtaagaagttgaagtagctgcctg 334  Q
    |||||||| |||||||||||||    ||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||| | ||||||    
T  6527364 aaagtagtgttttattgaatttcactaaattgacaagtcaacttccggtgtatgaactaggaaggacatacaaagagtaagatgttgaagtcgatgcctg 6527265  T
Q  335 agtcctgacatcaca 349  Q
    |||| ||||||||||    
T  6527264 agtcttgacatcaca 6527250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 6848945 - 6848831
Alignment:
Q  240 aaagtagttttttattgaattt----aaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa-agtaagaagttgaagtagctgcctg 334  Q
    |||||||| |||||||||||||    ||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||| | ||||||    
T  6848945 aaagtagtgttttattgaatttcactaaattgacaagtcaacttccggtgtatgaactaggaaggacatacaaagagtaagatgttgaagtggatgcctg 6848846  T
Q  335 agtcctgacatcaca 349  Q
    |||| ||||||||||    
T  6848845 agtcttgacatcaca 6848831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 6789370 - 6789268
Alignment:
Q  56 tgaataatcaaattaca--atgtttaatatattaacttatcctacactcattggagttaacatacgccaatgaactgttgtggctttttgatcagcacag 153  Q
    |||||||| ||||||||  ||| ||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||||||||||||||||||||||||    
T  6789370 tgaataattaaattacacaatgattaatatatgagcttatcctatactcattagagttaacattcactaatgaactgttgtggctttttgatcagcacag 6789271  T
Q  154 cag 156  Q
    |||    
T  6789270 cag 6789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 561 - 661
Target Start/End: Complemental strand, 6557781 - 6557680
Alignment:
Q  561 aattactttgttgcgaatgtccatgccctgctacctctttttagcagcaagaacaatgccttctctacctaaa-catgtacgaagcagacagtaagcaga 659  Q
    |||| |||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||| ||| |||| ||||||||||    
T  6557781 aatttctttgttgcgaatgtgtgtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaaccatgtatgaaacagaaagtaagcaga 6557682  T
Q  660 tt 661  Q
    ||    
T  6557681 tt 6557680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 6558809 - 6558718
Alignment:
Q  62 atcaaattacaatgtttaatatattaacttatcctacactcattggagttaacatacgccaatgaactgttgtggctttttgatcagcacag 153  Q
    ||||||||||| || ||||||||| | |||||||||||| || |||||||||||||| | |||||||  |||||||||||||||||||||||    
T  6558809 atcaaattacagtgattaatatatgagcttatcctacacccactggagttaacatacactaatgaaccattgtggctttttgatcagcacag 6558718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 643 - 715
Target Start/End: Complemental strand, 6788538 - 6788466
Alignment:
Q  643 agcagacagtaagcagattataaatgaaattacccttaaaaatctgaatgaatgtcaaaactcaacttttcta 715  Q
    |||||| | ||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||    
T  6788538 agcagaaactaagcagattataaatgaaattacctttaataatcttaatggatgtcaaaactcaacttttcta 6788466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 406 - 489
Target Start/End: Complemental strand, 6796700 - 6796616
Alignment:
Q  406 gtccatttccatcaaagtctgctgtctcatcattcctactgcat-aattagagtgatgccttgcagaatggttctgtgttacatt 489  Q
    |||||||||| |||||||||||||| |||||||||||| ||||| |||| ||||   |||||| |||||||||||||||||||||    
T  6796700 gtccatttccgtcaaagtctgctgtatcatcattcctaatgcataaattggagtagcgccttggagaatggttctgtgttacatt 6796616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 896 - 999
Target Start/End: Original strand, 6940571 - 6940674
Alignment:
Q  896 tgtctcaatggctttaactattatgccacccacctgcatttttcaaagtaaactacatttcatgattcaatcggtataataataaagattttaatacaac 995  Q
    ||||||| ||| | ||| |||||||||| ||| ||||||||||||||||||| || |||||||||||||||| |    |||| |||| ||||||||||||    
T  6940571 tgtctcattggttataattattatgccatccagctgcatttttcaaagtaaaataaatttcatgattcaatcagcgatataacaaagcttttaatacaac 6940670  T
Q  996 ttta 999  Q
    ||||    
T  6940671 ttta 6940674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 986 - 1031
Target Start/End: Complemental strand, 8572312 - 8572267
Alignment:
Q  986 ttaatacaactttatttgaaagaagccctcataagtcacaaccttc 1031  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  8572312 ttaatacaactatatttgaaagaagccctcataagtcacaaccttc 8572267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1078 - 1143
Target Start/End: Complemental strand, 6788313 - 6788244
Alignment:
Q  1078 tattactgaatagagatgattacaa----caacacaattagagaacaatagagcgaagaaaaacatttaa 1143  Q
    |||||||| ||||||||||||||||    ||||||||||||||||||||||| |||||||||| ||||||    
T  6788313 tattactggatagagatgattacaatttacaacacaattagagaacaatagatcgaagaaaaagatttaa 6788244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 502 - 553
Target Start/End: Complemental strand, 6549783 - 6549732
Alignment:
Q  502 ccagtcttattgatgcatcggctactcattctaatgaagaaaagatggagcc 553  Q
    |||||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  6549783 ccagtcttattgatgcattggctacacattctaatgaagaaaagacggagcc 6549732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 730 - 780
Target Start/End: Complemental strand, 6788472 - 6788422
Alignment:
Q  730 ttttctaatttctaaataattatctactcagttaagtgtagcctaacaatg 780  Q
    |||||||||||| || | |||||||||||||||||||||||||||||||||    
T  6788472 ttttctaatttccaatttattatctactcagttaagtgtagcctaacaatg 6788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 689 - 775
Target Start/End: Complemental strand, 6549225 - 6549138
Alignment:
Q  689 aatgaatgtcaaaactcaa--cttttctatccttatgtttcatttttctaatttctaaataattatctactcagttaagtgtagcctaa 775  Q
    |||| ||||||||||||||  ||| ||||||||| ||||||||||||||||||||  |||  | |||||| ||||||||||||||||||    
T  6549225 aatggatgtcaaaactcaaaacttatctatccttgtgtttcatttttctaatttc-caattttgatctacgcagttaagtgtagcctaa 6549138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 596 - 668
Target Start/End: Complemental strand, 6549295 - 6549222
Alignment:
Q  596 tctttttagcagcaagaacaatgccttctctacctaaac-atgtacgaagcagacagtaagcagattataaatg 668  Q
    ||||||| |||||||||||| || ||| ||||||||||| ||||||||| |||| |||||||||||| ||||||    
T  6549295 tcttttttgcagcaagaacactgtcttatctacctaaaccatgtacgaaacagaaagtaagcagattgtaaatg 6549222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 987 - 1058
Target Start/End: Original strand, 6943817 - 6943891
Alignment:
Q  987 taatacaactttatttgaaagaagccctcataagt---cacaaccttcgacaactcagtaggatatagaataaga 1058  Q
    |||||||||||||||||| |||||||||||| |||    ||||| ||||||||||||||||||| | ||||||||    
T  6943817 taatacaactttatttgacagaagccctcattagtaacaacaactttcgacaactcagtaggattttgaataaga 6943891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 6527439 - 6527396
Alignment:
Q  157 ctaattatgcagatagataaacttattcacaaactgagaaaaag 200  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  6527439 ctaatgatgcagaaagataaacttattcacaaactgagaaaaag 6527396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 561 - 667
Target Start/End: Complemental strand, 6848113 - 6848006
Alignment:
Q  561 aattactttgttgcgaatgtccatgccctgctacctctttttagcagcaagaacaatgccttctctacctaaa-catgtacgaagcagacagtaagcaga 659  Q
    |||| ||||||||||||| |   |||||||||||||||||||   ||||||||||||||||| |||| ||||| ||||||   | |||| ||||||||||    
T  6848113 aatttctttgttgcgaatttgggtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaaccatgtatttaacagaaagtaagcaga 6848014  T
Q  660 ttataaat 667  Q
    || |||||    
T  6848013 ttttaaat 6848006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 6849020 - 6848977
Alignment:
Q  157 ctaattatgcagatagataaacttattcacaaactgagaaaaag 200  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  6849020 ctaatgatgcagaaagataaacttattcacaaactgagaaaaag 6848977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 914 - 967
Target Start/End: Original strand, 6943756 - 6943809
Alignment:
Q  914 tattatgccacccacctgcatttttcaaagtaaactacatttcatgattcaatc 967  Q
    |||||||||| |||  |||||||||||||||||| || ||||||||||||||||    
T  6943756 tattatgccatccagttgcatttttcaaagtaaaataaatttcatgattcaatc 6943809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 6410991 - 6410959
Alignment:
Q  205 cagaatttagttatgatttgttgatagttttat 237  Q
    |||||||||||||||||||||||||||||||||    
T  6410991 cagaatttagttatgatttgttgatagttttat 6410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 6785637 - 6785573
Alignment:
Q  54 tctgaataatcaaattacaatgtttaatatattaacttatcctacactcattggagttaacatac 118  Q
    |||||||||| | ||  ||||| ||||||||| | |||||||||||||| |||||||||||||||    
T  6785637 tctgaataataagatcgcaatgattaatatatgagcttatcctacactctttggagttaacatac 6785573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 584 - 634
Target Start/End: Complemental strand, 6526510 - 6526460
Alignment:
Q  584 tgccctgctacctctttttagcagcaagaacaatgccttctctacctaaac 634  Q
    |||||||||||||||||||   ||||||||||||||||| |||| ||||||    
T  6526510 tgccctgctacctcttttttatagcaagaacaatgccttatctatctaaac 6526460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1038 - 1080
Target Start/End: Complemental strand, 6549014 - 6548972
Alignment:
Q  1038 tcagtaggatatagaataagatgtgaaatttccaaatcattat 1080  Q
    |||||||||||||||||||||  |||||| |||||||||||||    
T  6549014 tcagtaggatatagaataagagctgaaatgtccaaatcattat 6548972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 6482887 - 6482846
Alignment:
Q  402 agctgtccatttccatcaaagtctgctgtctcatcattccta 443  Q
    |||||||||||| ||||||| ||||||| |||||||||||||    
T  6482887 agctgtccattttcatcaaattctgctgactcatcattccta 6482846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 6558695 - 6558662
Alignment:
Q  167 agatagataaacttattcacaaactgagaaaaag 200  Q
    |||||||||||| |||||||||||||||||||||    
T  6558695 agatagataaacctattcacaaactgagaaaaag 6558662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 6788575 - 6788534
Alignment:
Q  566 ctttgttgcgaatgtccatgccctgctacctctttttagcag 607  Q
    ||||||||||||||| |||||| |||||| ||||||||||||    
T  6788575 ctttgttgcgaatgtgcatgccatgctacatctttttagcag 6788534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 36402360 - 36402331
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  36402360 tcatgtgggtcagtgtggttcttagcttgg 36402331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 39353731 - 39353760
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  39353731 tcatgtgggtcagtgtggttcttagcttgg 39353760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 41182501 - 41182530
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  41182501 tcatgtgggtcagtgtggttcttagcttgg 41182530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 883 - 1030
Target Start/End: Complemental strand, 11122 - 10974
Alignment:
Q  883 cttgatgcagaaatgtctcaatggctttaactattatgccacccacctgcatttttcaaagtaaactacatttcatgattca-atcggtataataataaa 981  Q
    |||||||||||| |||||||| |  | ||| |||||||||| ||| ||| ||||||||||||||| |||||||||| ||||| ||| |||  ||||||||    
T  11122 cttgatgcagaactgtctcaaagaatataattattatgccatccagctgaatttttcaaagtaaaatacatttcataattcacatcagtactataataaa 11023  T
Q  982 gattttaatacaactttatttgaaagaagccctcataagtcacaacctt 1030  Q
      ||||| ||||||||||||||||||| | |||| || |||||||||||    
T  11022 agttttattacaactttatttgaaagacgacctcttaggtcacaacctt 10974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 12048 - 11977
Alignment:
Q  242 agtagttttttattgaattt----aaattgacaagtcaaattccggtatatgaactacgaaggacatacaaa 309  Q
    |||||| |||||||||||||    ||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  12048 agtagtgttttattgaatttcactaaattgacaagtcaacttccggtgtatgaactaggaaggacatacaaa 11977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 12125 - 12082
Alignment:
Q  157 ctaattatgcagatagataaacttattcacaaactgagaaaaag 200  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  12125 ctaatgatgcagaaagataaacttattcacaaactgagaaaaag 12082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 584 - 634
Target Start/End: Complemental strand, 11217 - 11167
Alignment:
Q  584 tgccctgctacctctttttagcagcaagaacaatgccttctctacctaaac 634  Q
    |||||||||||||||||||   ||||||||||||||||| |||| ||||||    
T  11217 tgccctgctacctcttttttatagcaagaacaatgccttatctatctaaac 11167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 26279655 - 26279685
Alignment:
Q  19 atcatgtgggtcagtgtggttcttagcttgg 49  Q
    |||||||||||||||||||||||||||||||    
T  26279655 atcatgtgggtcagtgtggttcttagcttgg 26279685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 3557223 - 3557252
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  3557223 tcatgtgggtcagtgtggttcttagcttgg 3557252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 8298787 - 8298758
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  8298787 tcatgtgggtcagtgtggttcttagcttgg 8298758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 9714834 - 9714805
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  9714834 tcatgtgggtcagtgtggttcttagcttgg 9714805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 12724275 - 12724304
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  12724275 tcatgtgggtcagtgtggttcttagcttgg 12724304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 12785758 - 12785787
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  12785758 tcatgtgggtcagtgtggttcttagcttgg 12785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 13821621 - 13821592
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  13821621 tcatgtgggtcagtgtggttcttagcttgg 13821592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 18809571 - 18809600
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  18809571 tcatgtgggtcagtgtggttcttagcttgg 18809600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 20337029 - 20337000
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  20337029 tcatgtgggtcagtgtggttcttagcttgg 20337000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 27114904 - 27114933
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  27114904 tcatgtgggtcagtgtggttcttagcttgg 27114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 38678999 - 38678970
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  38678999 tcatgtgggtcagtgtggttcttagcttgg 38678970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 6347913 - 6347942
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  6347913 tcatgtgggtcagtgtggttcttagcttgg 6347942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 32338431 - 32338460
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  32338431 tcatgtgggtcagtgtggttcttagcttgg 32338460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 39259839 - 39259810
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  39259839 tcatgtgggtcagtgtggttcttagcttgg 39259810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 44866639 - 44866668
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  44866639 tcatgtgggtcagtgtggttcttagcttgg 44866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 11975586 - 11975615
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  11975586 tcatgtgggtcagtgtggttcttagcttgg 11975615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 16395921 - 16395950
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  16395921 tcatgtgggtcagtgtggttcttagcttgg 16395950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 31319149 - 31319178
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  31319149 tcatgtgggtcagtgtggttcttagcttgg 31319178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 6964074 - 6964103
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  6964074 tcatgtgggtcagtgtggttcttagcttgg 6964103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 16024466 - 16024495
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  16024466 tcatgtgggtcagtgtggttcttagcttgg 16024495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 28780309 - 28780280
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  28780309 tcatgtgggtcagtgtggttcttagcttgg 28780280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 33281686 - 33281715
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  33281686 tcatgtgggtcagtgtggttcttagcttgg 33281715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 45925192 - 45925221
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  45925192 tcatgtgggtcagtgtggttcttagcttgg 45925221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 52502009 - 52502038
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  52502009 tcatgtgggtcagtgtggttcttagcttgg 52502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 1115704 - 1115733
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  1115704 tcatgtgggtcagtgtggttcttagcttgg 1115733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 13279287 - 13279316
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  13279287 tcatgtgggtcagtgtggttcttagcttgg 13279316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 15912311 - 15912340
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  15912311 tcatgtgggtcagtgtggttcttagcttgg 15912340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 17137239 - 17137210
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  17137239 tcatgtgggtcagtgtggttcttagcttgg 17137210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 38208932 - 38208961
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  38208932 tcatgtgggtcagtgtggttcttagcttgg 38208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 38703122 - 38703093
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  38703122 tcatgtgggtcagtgtggttcttagcttgg 38703093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 44760647 - 44760676
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  44760647 tcatgtgggtcagtgtggttcttagcttgg 44760676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 12700089 - 12700060
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  12700089 tcatgtgggtcagtgtggttcttagcttgg 12700060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 14586873 - 14586844
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  14586873 tcatgtgggtcagtgtggttcttagcttgg 14586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 22859271 - 22859300
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  22859271 tcatgtgggtcagtgtggttcttagcttgg 22859300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 27217422 - 27217451
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  27217422 tcatgtgggtcagtgtggttcttagcttgg 27217451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 29961998 - 29962027
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  29961998 tcatgtgggtcagtgtggttcttagcttgg 29962027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 33801932 - 33801961
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  33801932 tcatgtgggtcagtgtggttcttagcttgg 33801961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 50261511 - 50261482
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  50261511 tcatgtgggtcagtgtggttcttagcttgg 50261482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 52631881 - 52631852
Alignment:
Q  20 tcatgtgggtcagtgtggttcttagcttgg 49  Q
    ||||||||||||||||||||||||||||||    
T  52631881 tcatgtgggtcagtgtggttcttagcttgg 52631852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University