View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_22 (Length: 293)
Name: NF3306_2D_low_22
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 39850565 - 39850269
Alignment:
| Q |
1 |
gttgaaacaatatcctttggccctgaaacgacgtcaat----ctgggcaaaactattaacacttccgcttatttatcttctgcctctctctttgtatttt |
96 |
Q |
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| T |
39850565 |
gttgaaacaatatcctttggccctgaaacgacgtcaattaatctgggcaaaactattaacacttccgcttatttatcttctgcctctctctttgtatttt |
39850466 |
T |
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| Q |
97 |
ctttcgatttgatgcacttttgtattggtcatcttaagttggaagtgtcgtgaacacgttccaaacatgtgaaagtttattgaagttataattagctagt |
196 |
Q |
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| T |
39850465 |
ctttcgatttgatgtacttttgtattggtcatcttaagttggaagtgtggtgaacacgttccaaacatgtgaaagtttattgaagttatagttagctagt |
39850366 |
T |
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| Q |
197 |
cattagaagagttaattagtagttactggatgcctataaatatgttttgatgtactcttttattttaactttttattcgtttgtaatattctatttc |
293 |
Q |
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| T |
39850365 |
cattagaagagttaattagtagttattggatgcctataaatatgttttgatgtactcttttattttaactttttattcgtttgtaatattctatttc |
39850269 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 15543913 - 15543837
Alignment:
| Q |
83 |
tctctttgtattttctttcgatttgatgcacttttgtattggtcatcttaagttggaagtgtcgtgaacacgttccaa |
160 |
Q |
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| T |
15543913 |
tctccttgtattttcatttg-tttgatgtacttttgtattgttcatctcaagttggaagtgctgtgaacaccttccaa |
15543837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 20542130 - 20542219
Alignment:
| Q |
173 |
ttattgaagttataattagctagtcattagaagagttaattagtagttactggatgcctataaatatgttttgatgtactcttttatttt |
262 |
Q |
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| T |
20542130 |
ttattgaagatatgattagatggttattaggagtattagttagtagctagtggaggcctataaataggctttgatgtacacttttatttt |
20542219 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 11815040 - 11815096
Alignment:
| Q |
104 |
tttgatgcacttttgtattggtcatcttaagttggaagtgtcgtgaacacgttccaa |
160 |
Q |
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| T |
11815040 |
tttgatgtacttttgtattgttcatcccaagttggaagtgttgtaaacaccttccaa |
11815096 |
T |
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