View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_24 (Length: 285)
Name: NF3306_2D_low_24
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 19822381 - 19822108
Alignment:
| Q |
12 |
aacacaaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgttcttataatnnnn |
111 |
Q |
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| T |
19822381 |
aacacaaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgttcttataataaaa |
19822282 |
T |
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| Q |
112 |
nnnntgaaataaataaacggttcagaattgtattacccttgcaatcatggatatcccctcattgctataacggttttttcaaattttaaaagagagtgta |
211 |
Q |
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| T |
19822281 |
aaaatgaaataaataaacggtttagaattgtattacccatgcaatcatggatatcccctcattgctataacggttttttcaaattttaaaagagagtgta |
19822182 |
T |
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| Q |
212 |
ggaaaaagtagaaaccaaataatgcttttcaaattaatccatagctaataaaacctcatccaaatattctttta |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19822181 |
ggaaaaagtagaaaccaaataatgcttttcaaattaatacatagctaataaaacctcatccaaatattctttta |
19822108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 2973043 - 2972986
Alignment:
| Q |
227 |
caaataatgcttttcaaattaatccatagctaataaaacctcatccaaatattctttt |
284 |
Q |
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||||||||||||||||||||| ||||||||| | |||||| |||| |||||| |||| |
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| T |
2973043 |
caaataatgcttttcaaattagtccatagctgagaaaaccccatcttaatattgtttt |
2972986 |
T |
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