View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_26 (Length: 265)
Name: NF3306_2D_low_26
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4265807 - 4266057
Alignment:
| Q |
1 |
tttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
91 |
Q |
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| T |
4265807 |
tttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
4265906 |
T |
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| Q |
92 |
aaatcttgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccctttctttgctacatgaattttgtcctttctatgatagaa |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||| |||||||||||||||||||||| |
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| T |
4265907 |
aaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagaattacccctttgtttgccacatgagttttgtcctttctatgatagaa |
4266006 |
T |
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| Q |
192 |
atgtaatcacggatccaaatgaattagaggcaaaatatttgagtgattggt |
242 |
Q |
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| T |
4266007 |
aaataatcaaggatccaaatgaattagaggcgaaatatttgagtgattggt |
4266057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4289916 - 4289666
Alignment:
| Q |
1 |
tttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
91 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289916 |
tttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
4289817 |
T |
|
| Q |
92 |
aaatcttgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccctttctttgctacatgaattttgtcctttctatgatagaa |
191 |
Q |
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| T |
4289816 |
aaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccctttgtttgccacatgagttttgtcctttctatgatagaa |
4289717 |
T |
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| Q |
192 |
atgtaatcacggatccaaatgaattagaggcaaaatatttgagtgattggt |
242 |
Q |
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| T |
4289716 |
aagtaataaaggatccaaatgaattagaggcaaaatatttaagtgattggt |
4289666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4260261 - 4260511
Alignment:
| Q |
1 |
tttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
91 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260261 |
tttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
4260360 |
T |
|
| Q |
92 |
aaatcttgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccctttctttgctacatgaattttgtcctttctatgatagaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||| ||||| |||||| |||||||||||||||||||||| |
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| T |
4260361 |
aaatcttgggcttacctatgtagaaagcttgaaattgaagtatctgaattagtattacccctttgtttgccacatgagttttgtcctttctatgatagaa |
4260460 |
T |
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| Q |
192 |
atgtaatcacggatccaaatgaattagaggcaaaatatttgagtgattggt |
242 |
Q |
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| |||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4260461 |
aattaattaaggatccaaatgaattagaggctaaatatttgagtgattggt |
4260511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4298500 - 4298250
Alignment:
| Q |
1 |
tttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
91 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298500 |
tttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatc |
4298401 |
T |
|
| Q |
92 |
aaatcttgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccctttctttgctacatgaattttgtcctttctatgatagaa |
191 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||| ||| | ||||||| ||||||| || ||| ||||| ||||| |||||||||||||||||||||| |
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| T |
4298400 |
aaatcttgggcttacctatgtagaaatattggaaaggaaatatctgaatcagaatcatccatttgtttgcctcatgagttttgtcctttctatgatagaa |
4298301 |
T |
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| Q |
192 |
atgtaatcacggatccaaatgaattagaggcaaaatatttgagtgattggt |
242 |
Q |
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| ||||||| ||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
4298300 |
aagtaatcaaggatccaaacgaattagaggaaaaatatttaagtgattggt |
4298250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 98 - 244
Target Start/End: Complemental strand, 4285111 - 4284965
Alignment:
| Q |
98 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccctttctttgctacatgaattttgtcctttctatgatagaaatgtaa |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccctttctttgccacatgaattttgtcctttctatgatagaaatgtaa |
4285012 |
T |
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| Q |
198 |
tcacggatccaaatgaattagaggcaaaatatttgagtgattggtca |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4285011 |
tcacggatccaaatgaattagaggcaaaatatttgagggattggtca |
4284965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4285186 - 4285109
Alignment:
| Q |
1 |
tttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatgg |
69 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4285186 |
tttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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