View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_2D_low_3 (Length: 737)
Name: NF3306_2D_low_3
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_3 |
 | |
|
| [»] scaffold0896 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 21 - 731
Target Start/End: Original strand, 4149434 - 4150144
Alignment:
| Q |
21 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaacaatgaaaacac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4149434 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaacaatgaaaacac |
4149533 |
T |
|
| Q |
121 |
ataatatcgacgaaaataaagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctg |
220 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4149534 |
ataatatcgatgaaaatgaagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctg |
4149633 |
T |
|
| Q |
221 |
tgttctgtccgcgagatggaagaatctctggaagtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtg |
320 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||| |
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|
| T |
4149634 |
cgttttgtccacgagatggaagaatctctggaagtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtg |
4149733 |
T |
|
| Q |
321 |
tctcaatttttgtatctacgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataa |
420 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
4149734 |
tatcaatttttgtatctacgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcaactgggttataa |
4149833 |
T |
|
| Q |
421 |
aatatgcatttgaccacggtgtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatc |
520 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
4149834 |
aatacgcatttgaccacggtgtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgtttcatgtcacactttaacatc |
4149933 |
T |
|
| Q |
521 |
tcttaccctttgtagaaacgatcaattttgttatcattcaccattattcccaacttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttt |
620 |
Q |
| |
|
|||||||||||||| |||| |||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4149934 |
tcttaccctttgtacaaacaatcaatttggtcatccttcatcattattcccaacttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttt |
4150033 |
T |
|
| Q |
621 |
tcctttcatggtagtggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacc |
720 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4150034 |
gcctttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttcaagaacaaaacc |
4150133 |
T |
|
| Q |
721 |
tgttcatatca |
731 |
Q |
| |
|
||||||||||| |
|
|
| T |
4150134 |
tgttcatatca |
4150144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 21 - 731
Target Start/End: Original strand, 4165205 - 4165916
Alignment:
| Q |
21 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaac-aatgaaaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4165205 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaaccaatgaaaaca |
4165304 |
T |
|
| Q |
120 |
cataatatcgacgaaaataaagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacct |
219 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4165305 |
cataatatcgatgaaaatgaagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacct |
4165404 |
T |
|
| Q |
220 |
gtgttctgtccgcgagatggaagaatctctggaagtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgt |
319 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
4165405 |
gcgttttgtccacgagatggaagaatctctggaagtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgt |
4165504 |
T |
|
| Q |
320 |
gtctcaatttttgtatctacgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttata |
419 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||| |||||||||| |
|
|
| T |
4165505 |
gtatcaatttttgtatctacgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcatgtgggttata |
4165604 |
T |
|
| Q |
420 |
aaatatgcatttgaccacggtgtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacat |
519 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
4165605 |
aaatacgcatttgaccacggtgtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgttttatgtcacactttaacat |
4165704 |
T |
|
| Q |
520 |
ctcttaccctttgtagaaacgatcaattttgttatcattcaccattattcccaacttctctgaatttgcctgcattaaccagcttgtgtctaaaatactt |
619 |
Q |
| |
|
||||||||||||||| |||| |||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4165705 |
ctcttaccctttgtacaaacaatcaatttggtcatccttcatcattattcccaacttctctgaatttgcctgcattaaccagcatgtgtctaaaatactt |
4165804 |
T |
|
| Q |
620 |
ttcctttcatggtagtggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaac |
719 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4165805 |
tgcctttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaac |
4165904 |
T |
|
| Q |
720 |
ctgttcatatca |
731 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4165905 |
ctgttcatatca |
4165916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 4148754 - 4148805
Alignment:
| Q |
21 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaa |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4148754 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaa |
4148805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 32413582 - 32413704
Alignment:
| Q |
132 |
gaaaataaagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccg |
231 |
Q |
| |
|
|||||| |||||||| |||| |||||| | ||||||| ||||||| |||||| || ||||||||||||| | ||||||||||| || || ||||| |
|
|
| T |
32413582 |
gaaaatcaagacagactcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtcca |
32413681 |
T |
|
| Q |
232 |
cgagatggaagaatctctggaag |
254 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
32413682 |
caagatggaagaatctctggaag |
32413704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 7115645 - 7115543
Alignment:
| Q |
153 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
252 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
7115645 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7115546 |
T |
|
| Q |
253 |
agt |
255 |
Q |
| |
|
||| |
|
|
| T |
7115545 |
agt |
7115543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 7120717 - 7120615
Alignment:
| Q |
153 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
252 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
7120717 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7120618 |
T |
|
| Q |
253 |
agt |
255 |
Q |
| |
|
||| |
|
|
| T |
7120617 |
agt |
7120615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 7124121 - 7124019
Alignment:
| Q |
153 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
252 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
7124121 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7124022 |
T |
|
| Q |
253 |
agt |
255 |
Q |
| |
|
||| |
|
|
| T |
7124021 |
agt |
7124019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 8656740 - 8656649
Alignment:
| Q |
163 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
254 |
Q |
| |
|
||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
|
|
| T |
8656740 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
8656649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 19658395 - 19658349
Alignment:
| Q |
207 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
253 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
19658395 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19658349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 19675234 - 19675188
Alignment:
| Q |
207 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
253 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
19675234 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19675188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 642
Target Start/End: Complemental strand, 43863747 - 43863685
Alignment:
| Q |
580 |
tgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtgatg |
642 |
Q |
| |
|
|||||||||| |||||||||| ||||| | |||| ||||||||||||||| | |||| ||||| |
|
|
| T |
43863747 |
tgaatttgccagcattaaccaccttgtctttaaagtacttttcctttcatcgcagtgatgatg |
43863685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 2256 - 2321
Alignment:
| Q |
190 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
255 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||| || || |||||||||||||||||||||| |
|
|
| T |
2256 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagt |
2321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 620
Target Start/End: Original strand, 52187235 - 52187280
Alignment:
| Q |
575 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttt |
620 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||| |||||| |
|
|
| T |
52187235 |
ttctctgaatttgccagcattaaccaacttgtctctaaagtacttt |
52187280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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