View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_2D_low_30 (Length: 238)
Name: NF3306_2D_low_30
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 42474721 - 42474940
Alignment:
| Q |
1 |
acatgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474721 |
acatgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagt |
42474820 |
T |
|
| Q |
101 |
cttttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgcttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474821 |
cttttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgcttta |
42474920 |
T |
|
| Q |
201 |
gtatgtactgactactgagt |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
42474921 |
gtatgtactggctactgagt |
42474940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 42468057 - 42468254
Alignment:
| Q |
6 |
cttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagattttcttagtctttt |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42468057 |
cttttgtaggctgtaaacatttatggagctactggtctatgcttttcttgtgattttatttataaatgttcaattttttcatagattttcttagtctttt |
42468156 |
T |
|
| Q |
106 |
cttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggttacatgtgctttagta |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42468157 |
cttagctgcgtgcaaattattccatgatgcatgcaatcttattcttgttgagtc--atgcaaatcttaaggtttttccaatggttacatgtgctttagta |
42468254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 42480204 - 42480414
Alignment:
| Q |
1 |
acatgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttca-----attttttcctagattttc |
95 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||| |||| |||||||||||||| |||| || |||||||||||| | ||||||||| |||||| |
|
|
| T |
42480204 |
acatgctttattaggctataaacatttatggagctattggtttatgctttacttgttatttgatttatacatgttcaaatttaatttttcctaaattttc |
42480303 |
T |
|
| Q |
96 |
ttagtctt-ttcttagctacgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggttacat |
192 |
Q |
| |
|
||||||| || |||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||| |
|
|
| T |
42480304 |
ctagtcttattgttagctacaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggttacat |
42480403 |
T |
|
| Q |
193 |
gtgctttagta |
203 |
Q |
| |
|
|||| |||||| |
|
|
| T |
42480404 |
gtgcattagta |
42480414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University