View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_2D_low_33 (Length: 225)
Name: NF3306_2D_low_33
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6576604 - 6576812
Alignment:
| Q |
1 |
cactatctgactgctatttggtttatattggcggtgctacagcctctacttaaaaccacaatgcaatggtcaatcggtttcttgtagcacctaggggccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6576604 |
cactatctgactgctatttggtttatattggcggtgctacagcctctacttaaaaccacaatgcaatggtcaatcggtttcttgtagcacctaggggcca |
6576703 |
T |
|
| Q |
101 |
ctatgccacacctctatagacgccgctattgactatagggcattttattgccccattttctttattttcttcactcgtgattaactgcacagaagaaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
6576704 |
ctatgccacacctctatagacgccgctattgactatagggcattttattgccccattttctttattttcttcacttgtgattaactgccaagaagaaatg |
6576803 |
T |
|
| Q |
201 |
gatattgct |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
6576804 |
gatattgct |
6576812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University