View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_2D_low_7 (Length: 489)
Name: NF3306_2D_low_7
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 49655350 - 49655037
Alignment:
| Q |
1 |
ctttgttggtgtctggtcttgaaaacacaccattggaaactctaaatgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagatt |
100 |
Q |
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| T |
49655350 |
ctttgttggtgtttgatcttgaaaaaacaacattggaaactctaaatgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagatt |
49655251 |
T |
|
| Q |
101 |
aaggattggaaaatca------ttgttacaaatgataccaaaaccagggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttata |
194 |
Q |
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| T |
49655250 |
aaggattggaaaaccaatagtattgttacaagtgataccaaaaccagggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttata |
49655151 |
T |
|
| Q |
195 |
ctttggttgccacatgttttggcttcacaatctacaaatttttgttctatagagcatacagtagttgtggtaagaagaagataaaaaagggtcatgtatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
49655150 |
ctttggttgccacatgttttggcttcacaatctacaaatttttgttctatagagcatacagtggttgtggtaagaagaagataaaaaagggtgatgtatg |
49655051 |
T |
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| Q |
295 |
aataaattaaggga |
308 |
Q |
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|||||||||||||| |
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| T |
49655050 |
aataaattaaggga |
49655037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49712872 - 49712626
Alignment:
| Q |
1 |
ctttgttggtgtctggtcttgaaaacacaccattggaaactctaaatgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagatt |
100 |
Q |
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|||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49712872 |
ctttgttggtgtttgatcttgaaaaaacaacattggaaactctaaatgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagatt |
49712773 |
T |
|
| Q |
101 |
aaggattggaaaatca------ttgttacaaatgataccaaaaccagggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttata |
194 |
Q |
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||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49712772 |
aaggattggaaaaccaatagtattgttacaagtgataccaaaaccagggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttata |
49712673 |
T |
|
| Q |
195 |
ctttggttgccacatgttttggcttcacaatctacaaatttttgttc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49712672 |
ctttggttgccacatgttttggcttcacaatctacaaatttttgttc |
49712626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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