View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_2D_low_8 (Length: 477)
Name: NF3306_2D_low_8
Description: NF3306_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_2D_low_8 |
 | |
|
| [»] chr8 (9 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 2028594 - 2028118
Alignment:
| Q |
1 |
gcattgagcacataaattgtatatgtatgcatacaaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2028594 |
gcattgagcacataaattgtatatgcatgcatacaaacatacctgcatacaacaggaaaatcttctggtttgggagtatcaggagccaaggaacaagtac |
2028495 |
T |
|
| Q |
101 |
aagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2028494 |
aagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcaaatctcttgtataaaactcctttttagc |
2028395 |
T |
|
| Q |
201 |
atctgtttccatctcatgaaacctcttcacaccatccttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtt |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2028394 |
atctgtctccatctcatgaaacctcttcacaccatccttcatctcctcaagaacactcaaagggattccatgattaacaacctgaaaaaacccccaagtt |
2028295 |
T |
|
| Q |
301 |
tcacatgcttccttgattttgctaacaatcccttgatgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2028294 |
tcacatgcttccttgattttgctaacaatcccttgatgaatacttggatctttgttatcaatatctttaaggtctatgacaggaataacatggcttgtgt |
2028195 |
T |
|
| Q |
401 |
tgttggctatctcatatttgtctggttgatgatggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2028194 |
tgtaggctatctcatatttgtcaggttgatgatggaataaacttggtatcttctcaactcctccatcaacaagtcct |
2028118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 37 - 477
Target Start/End: Original strand, 1950435 - 1950878
Alignment:
| Q |
37 |
acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1950435 |
acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca |
1950534 |
T |
|
| Q |
137 |
aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaa---ctcctttttagcatctgtttccatctcatgaaacctcttcacacc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1950535 |
aatcaaaattgcttttgtaaataaatgatttatttctatcttttgtgtaaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacacc |
1950634 |
T |
|
| Q |
234 |
atccttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatccct |
333 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1950635 |
atccttcatctcctcaagaacactcaaagggattccatgattaacaacctgaaaaaacccccaagtttcacatgcttccttgattttgccaacaatccct |
1950734 |
T |
|
| Q |
334 |
tgatgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatgat |
433 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
1950735 |
tgatgaatacttggatctttgttatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgat |
1950834 |
T |
|
| Q |
434 |
ggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1950835 |
ggaataaacttggtatcttctcaactcctccatcaacaagtcct |
1950878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 477
Target Start/End: Complemental strand, 2050337 - 2049895
Alignment:
| Q |
35 |
aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctata |
134 |
Q |
| |
|
||||||||||||| || | |||||||||| ||||||||||||||||||||||||| |||| | | || ||||||||||||||||||| || |||||||| |
|
|
| T |
2050337 |
aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgagtgccggagagctata |
2050238 |
T |
|
| Q |
135 |
caaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata-aaactcctttttagcatctgtttccatctcatgaaacctcttcacacc |
233 |
Q |
| |
|
| ||||||||| || || |||| ||| |||| || ||||||||||||||| ||||| ||||| || ||||| || |||| |||||| ||||| || |
|
|
| T |
2050237 |
aatatcaaaattactattataaacaaaggatctattcatatctcttgtatacaaactt-tttttggcttctgtagcctgttcataaaaccttttcacccc |
2050139 |
T |
|
| Q |
234 |
atccttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatccct |
333 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||| ||| |
|
|
| T |
2050138 |
atctttcaactcctcaagaacactcaaagggattccatgattaacaacctgaaaaaaaccccaagtttcacatgcttccttgatattgtcgacaattcct |
2050039 |
T |
|
| Q |
334 |
tgatgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatgat |
433 |
Q |
| |
|
||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2050038 |
tgatgaatactagggtcttgattatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggcttcctcatatttgtctggttgatgat |
2049939 |
T |
|
| Q |
434 |
ggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
2049938 |
ggaataaggttggtatcttcttaactcctgcatcaacaagtcct |
2049895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 477
Target Start/End: Complemental strand, 2033099 - 2032654
Alignment:
| Q |
35 |
aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct |
131 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||| |||| || || |||||||||||||||||||||||||||| |
|
|
| T |
2033099 |
aaacatacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagct |
2033000 |
T |
|
| Q |
132 |
atacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcaca |
231 |
Q |
| |
|
||| | ||||||||| || || |||| ||| |||| || ||| ||| ||||| || || ||||| | ||||| ||| |||| ||||||||| ||| |
|
|
| T |
2032999 |
ataaatatcaaaattactattataaacaaaggatctattgctatttctagtatacaattcttttttgacttctgtatcctgttcataaaacctcttgaca |
2032900 |
T |
|
| Q |
232 |
ccatccttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatcc |
331 |
Q |
| |
|
||||| |||| |||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
2032899 |
ccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttccttgatattgtcaactatcc |
2032800 |
T |
|
| Q |
332 |
cttgatgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatg |
431 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2032799 |
cttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaatagcatggctcatgttgttggctttctcatatttgtcaggttgatg |
2032700 |
T |
|
| Q |
432 |
atggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2032699 |
atggaataagcttggtatcttcttaagtcctgcatcaacaagtcct |
2032654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 477
Target Start/End: Complemental strand, 2054346 - 2053901
Alignment:
| Q |
35 |
aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct |
131 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||| |||||||||| ||||||| |||| | || ||||| |||||||||||||||| ||||| |
|
|
| T |
2054346 |
aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct |
2054247 |
T |
|
| Q |
132 |
atacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata-aaactcctttttagcatctgtttccatctcatgaaacctcttcac |
230 |
Q |
| |
|
||| | ||||| |||||| ||||||||||| |||| ||||||||||||||||| ||||| ||||| || ||||| ||| |||| |||||| ||||| |
|
|
| T |
2054246 |
ataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaactt-tttttggcttctgtatcctgttcataaaaccttttcac |
2054148 |
T |
|
| Q |
231 |
accatccttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatc |
330 |
Q |
| |
|
||||| |||| |||||||||||| |||||||||||||||||||| |||||||| || | ||||||||||||||||||| ||| ||| ||| |
|
|
| T |
2054147 |
cccatcattcaactcctcaagaacactcaaagggattccatgattaacaacctgaaaaaaacctaatgtttcacatgcttccttgactttctcaactatc |
2054048 |
T |
|
| Q |
331 |
ccttgatgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgat |
430 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2054047 |
ccttggtgaatacttggatctttattatcaatatcatcaaggtctataacaggaataacattgcttgtattgttggctatctcatatttgtctggttgat |
2053948 |
T |
|
| Q |
431 |
gatggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2053947 |
gatggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
2053901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 39 - 477
Target Start/End: Complemental strand, 10767731 - 10767293
Alignment:
| Q |
39 |
atacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaa |
138 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
10767731 |
atacctgcatactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaata |
10767632 |
T |
|
| Q |
139 |
tcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatcct |
238 |
Q |
| |
|
||||| || || ||||||||||| ||| ||| ||||||||||||| || || ||||| | ||||| ||| ||||| ||||||||| |||||||| | |
|
|
| T |
10767631 |
tcaaagttactattgtaaataaaggatttatgtctatctcttgtatacaaatcttttttgacttctgtatcctgctcataaaacctcttaacaccatctt |
10767532 |
T |
|
| Q |
239 |
tcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatcccttgatg |
338 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||| ||||| || ||||| ||||||||||||||||| | |||| |||||| ||| || |
|
|
| T |
10767531 |
tcaactcctcaagaacactcaaagggattccatgattaacaacttgaaaaaacccccatgtttcacatgcttccttcactttgtcaacaattttttggtg |
10767432 |
T |
|
| Q |
339 |
aatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatggaat |
438 |
Q |
| |
|
||||||||||||||| | |||||||||| ||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||| |
|
|
| T |
10767431 |
aatacttggatctttgttatcaatatctgcaagatctatgataggaataacatggcttgtgttgtaggctaactcatatttatcaggttgatgatggaat |
10767332 |
T |
|
| Q |
439 |
aagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||| | || ||||| | || |||| |||||||||||||| |
|
|
| T |
10767331 |
aaggtagggatcttgttaagtcctccatcaacaagtcct |
10767293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 40 - 477
Target Start/End: Complemental strand, 2037149 - 2036709
Alignment:
| Q |
40 |
tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca |
136 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| |||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
2037149 |
tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
2037050 |
T |
|
| Q |
137 |
aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatc |
236 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| || |||||||||||||||||| || ||||| | ||||| || |||| |||||| ||||| ||||| |
|
|
| T |
2037049 |
tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatcttttttgacttctgtgtcttgttcataaaaccttttcaccccatc |
2036950 |
T |
|
| Q |
237 |
cttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatcccttga |
336 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2036949 |
tttcaactcctcaagaacactcaaagggattccatgattaacaacctgaaaaaaacctaatgtttcacatgcttccttgattttgccaacaatcccttgg |
2036850 |
T |
|
| Q |
337 |
tgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatgga |
436 |
Q |
| |
|
| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||| |
|
|
| T |
2036849 |
taaatacttggatctttattatcaatatctacaagatctatgacaggaataacatggcttgtgttgttggctttctcgtatttgtcaggttgacaatgga |
2036750 |
T |
|
| Q |
437 |
ataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||| |||||| ||| || |||| |||||||||||||| |
|
|
| T |
2036749 |
atatctcaggtatcctcttaagtcctccatcaacaagtcct |
2036709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 40 - 477
Target Start/End: Complemental strand, 2046526 - 2046086
Alignment:
| Q |
40 |
tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca |
136 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||| |||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
2046526 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
2046427 |
T |
|
| Q |
137 |
aatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatc |
236 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| || |||||||||||||||||| || ||||| | ||||| || |||| |||||| ||||| ||||| |
|
|
| T |
2046426 |
tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatcttttttgacttctgtgtcttgttcataaaaccttttcaccccatc |
2046327 |
T |
|
| Q |
237 |
cttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatcccttga |
336 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2046326 |
tttcaactcctcaagaacactcaaagggattccatgattaacaacctgaaaaaaacctaatgtttcacatgcttccttgattttgccaacaatcccttgg |
2046227 |
T |
|
| Q |
337 |
tgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatgatgga |
436 |
Q |
| |
|
| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| ||||| |
|
|
| T |
2046226 |
taaatacttggatctttattatcaatatctacaagatctatgacaggaataacatggcttgtgttgttggctttctggtatttgtcaggttgacaatgga |
2046127 |
T |
|
| Q |
437 |
ataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
||| |||||| ||| || |||| |||||||||||||| |
|
|
| T |
2046126 |
atatctcaggtatcctcttaagtcctccatcaacaagtcct |
2046086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 2057280 - 2057169
Alignment:
| Q |
55 |
ggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgt |
154 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||| ||||| || || ||||||||||||||||||| || |||||||| | ||||| |||||| |||| |
|
|
| T |
2057280 |
ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgt |
2057181 |
T |
|
| Q |
155 |
aaataaatgatc |
166 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
2057180 |
aaacaaaggatc |
2057169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 35 - 477
Target Start/End: Original strand, 48908694 - 48909139
Alignment:
| Q |
35 |
aaacatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctata |
134 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||| || | |
|
|
| T |
48908694 |
aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgagttaga |
48908793 |
T |
|
| Q |
135 |
caa---atcaaaattgcttttgtaaataaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcaca |
231 |
Q |
| |
|
||| | ||| ||| || || ||| |||| | ||| | | |||| ||||||| || || ||||| | |||| ||| ||||||||| ||||| | | |
|
|
| T |
48908794 |
caacccaccaatattactattataagtaaagggtcccttcggatctgttgtatacaaatctttttttacttctggatcctgctcatgaaatctcttaata |
48908893 |
T |
|
| Q |
232 |
ccatccttcatctcctcaagaacgctcaaagggattccatgattgacaacctgnnnnnnnccccaagtttcacatgcttccttgattttgctaacaatcc |
331 |
Q |
| |
|
||||| |||| |||||||||| | ||||||||||||||||||| |||||||| ||||| |||||||||||||| || | |||| || ||| |
|
|
| T |
48908894 |
ccatctttcaattcctcaagaatgttcaaagggattccatgattaacaacctgaaaaaaaccccatgtttcacatgcttctttcaatttgtcaataattt |
48908993 |
T |
|
| Q |
332 |
cttgatgaatacttggatctttatcatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggctatctcatatttgtctggttgatg |
431 |
Q |
| |
|
||| |||||| |||||||||| | |||||| ||| ||||||||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
48908994 |
tttggtgaataattggatctttgttatcaatgtctgcaaggtctatgataggaagaacatggcaattgttgtaggctatctcatttttgtctggttgatg |
48909093 |
T |
|
| Q |
432 |
atggaataagcttggtatcttctcaactcctgcatcaacaagtcct |
477 |
Q |
| |
|
|||||| |||||||| ||||||| || ||| ||||||||| |||| |
|
|
| T |
48909094 |
atggaaaaagcttgggatcttcttaataccttcatcaacaaatcct |
48909139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 28786134 - 28786228
Alignment:
| Q |
61 |
tcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgta |
155 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||| | |||||||||||||||||||||||| ||| ||||| | || ||||||||| ||||| |
|
|
| T |
28786134 |
tcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta |
28786228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 28713345 - 28713393
Alignment:
| Q |
101 |
aagtatccctccaattgagtgctggtgagctatacaaatcaaaattgct |
149 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
28713345 |
aagtatccctccaattaagtgctggtgatctatacaaatcaaaattgct |
28713393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 28736619 - 28736664
Alignment:
| Q |
101 |
aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
28736619 |
aagtatccctccaattaagtgctggtgaactatacaaatcaaaatt |
28736664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 28743245 - 28743290
Alignment:
| Q |
101 |
aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt |
146 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
28743245 |
aagtatccctccaattaagcgctggtgaactatacaaatcaaaatt |
28743290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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