View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_11 (Length: 408)
Name: NF3306_high_11
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 48406416 - 48406035
Alignment:
| Q |
10 |
agatgaaggggatagcagcaacttacatgatgactaataagcctctacctgttgggcattcaccatatgtttctggagtattacgtcccttaaaggtatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48406416 |
agatgaaggggatagcagcaacttacatgatgactaataagcctctacctgttgggcattcaccatatgttgctggagtattacgtcccttaaaggtatg |
48406317 |
T |
|
| Q |
110 |
tgatatcgatcaagttttatggtttatatgattttcaccctggttacttcttttcatggttactggttagctgtatttaaagaaaatgggacggtgatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
48406316 |
tgatatcgatcaagttttatggtttatatgattttcaccctggttacttcttttcatggttactggttagctgtatctaaagaaaatgggatggtgatat |
48406217 |
T |
|
| Q |
210 |
atttctggcatgatgtttagtttgatagcatgatcgtagagaaagcttaaacattcatggtgattggtttcattattactccctccgatcctatttataa |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48406216 |
atttctggtatgatgtttagtttgatagcatgatcgtagagaaagcttaaacattcatggtgattggtttcattattactccctccgatcctatttataa |
48406117 |
T |
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| Q |
310 |
gagacactgagtttattcttggtcctttatttaagagacattttgtgtattatcgatcaatttccttcaatccccctatatt |
391 |
Q |
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| T |
48406116 |
gagacactgagtttattcttggtcctttatttaagagacattttgtgtattatcgatcaatttccttcaatccccctatatt |
48406035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 48405057 - 48404994
Alignment:
| Q |
315 |
actgagtttattcttggtcctttatttaagagacattttgtgtattatcgatcaatttccttca |
378 |
Q |
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| T |
48405057 |
actgagtttatttttggtcctttatataagagacattttgtgtattattgatcaatttccttca |
48404994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 42828910 - 42829224
Alignment:
| Q |
10 |
agatgaaggggatagcagcaacttacatgatgactaataagcctctacctgttgggcattcaccatatgtttctggagtattacgtcccttaaaggtatg |
109 |
Q |
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|||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||| |||||||||||| | |||||||||||||| |||||||||| |
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| T |
42828910 |
agatgaaggggataacagcaacttacaggatgaccaataagcctctacctgttaggcactcaccatatgttgcaggagtattacgtcctctaaaggtatg |
42829009 |
T |
|
| Q |
110 |
tgatatcgatcaagttttatggtttatatgattttcaccctggttacttcttttcatggttactggttagctgtatttaaagaaaatgggacggtgatat |
209 |
Q |
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| T |
42829010 |
tgatatcgattaagttt-atggtttatattattttcaccctgattacttcttttcgtggttactggttagctgggtttaaagacaacgggatgttgatat |
42829108 |
T |
|
| Q |
210 |
atttctggcatgatgtttagtttgatagcatgatcgtagagaaagcttaaacattcatggtgattggtttcattattactccctccgatcctatttataa |
309 |
Q |
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| |||||| | |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
42829109 |
aattctggtaggatgtttagtttgacagcatgatcgtagagaaagctttaacatttatggtgattgg-ttcatcattactccctcctgtcctatttataa |
42829207 |
T |
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| Q |
310 |
gagacactgagtttatt |
326 |
Q |
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| T |
42829208 |
gagacactgagtttatt |
42829224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 17225396 - 17225363
Alignment:
| Q |
282 |
ttattactccctccgatcctatttataagagaca |
315 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
17225396 |
ttattactccctccgatcctatttacaagagaca |
17225363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 25891943 - 25891972
Alignment:
| Q |
286 |
tactccctccgatcctatttataagagaca |
315 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25891943 |
tactccctccgatcctatttataagagaca |
25891972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 2351129 - 2351157
Alignment:
| Q |
283 |
tattactccctccgatcctatttataaga |
311 |
Q |
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| T |
2351129 |
tattactccctccgatcctatttataaga |
2351157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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