View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_12 (Length: 369)
Name: NF3306_high_12
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 90 - 353
Target Start/End: Original strand, 5275587 - 5275849
Alignment:
| Q |
90 |
ttttctacacatcaatacactactaaaataattaagcagcacaatcaaggaaagtttagaccaattctggtgtacaagaaaaggtttattaaa-gttaat |
188 |
Q |
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| T |
5275587 |
ttttttacacatcaatacactagtaaaataattaaccagcacaatcaaggaaagtttagaccaattctagt--acaagaaaaggtttattaaaagttaat |
5275684 |
T |
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| Q |
189 |
caaaggacaaaagaaagacctattacatttgcaatgatagaaaattagtaagcttagaatctatggcctaactgagacagctttaggcaaagatacaagt |
288 |
Q |
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| T |
5275685 |
caaaggacaaaagaaagacccattacatttgcaatgatagaaaattagtaagcttagaatctatggcctaactgagacagctttaggcaaagatacaagt |
5275784 |
T |
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| Q |
289 |
actggactagatagagtttgtagcttgcaatctgatgaaataaattgaacatgttcctccatcat |
353 |
Q |
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| T |
5275785 |
actggactagatagagtttgtagcttgcaatctgatgaaataaattgaacatgttcctccatcat |
5275849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 5252072 - 5251975
Alignment:
| Q |
250 |
tatggcctaactgagacagctttaggcaaagatacaagtactggactagatagagtttgtagcttgcaatctgatgaaataaattgaacatgttcctc |
347 |
Q |
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| T |
5252072 |
tatggcctaactgaaagagctttaggcaaggtttcatgcacaggaattgatagagtttgtagcttgcaatcacttgaaatgaattgagcattttcctc |
5251975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 5269857 - 5269813
Alignment:
| Q |
309 |
tagcttgcaatctgatgaaataaattgaacatgttcctccatcat |
353 |
Q |
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| T |
5269857 |
tagcttgcagtcagatgcaatgaattgaacatgttcctccatcat |
5269813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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