View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_13 (Length: 365)
Name: NF3306_high_13
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 162 - 365
Target Start/End: Original strand, 28053675 - 28053878
Alignment:
| Q |
162 |
attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcg |
261 |
Q |
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| T |
28053675 |
attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcg |
28053774 |
T |
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| Q |
262 |
taactgcttccactcgacaatctagataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatccggcgaagacaccttcgccgaat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |
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| T |
28053775 |
taactgcttccactcgacaatctagataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatcaggcgaagacaccttctctgaat |
28053874 |
T |
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| Q |
362 |
ccgg |
365 |
Q |
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|||| |
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| T |
28053875 |
ccgg |
28053878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 28053524 - 28053599
Alignment:
| Q |
11 |
caaaggttgataagaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28053524 |
caaaggttgataagaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta |
28053599 |
T |
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