View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_high_24 (Length: 286)

Name: NF3306_high_24
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_high_24
NF3306_high_24
[»] chr8 (1 HSPs)
chr8 (1-268)||(1936557-1936828)
[»] chr5 (1 HSPs)
chr5 (101-175)||(34819621-34819695)
[»] chr2 (1 HSPs)
chr2 (101-175)||(37863950-37864024)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1936557 - 1936828
Alignment:
Q  1 aatccataaaactgatgtattgagactcctgtcctaaacatttaatacnnnnnnn--cacgagtttaacacaaaaaagagagaatttagcnnnnnnnnnn 98  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||         |||||||||||||||||||||||||||||||||              
T  1936557 aatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaacacaaaaaagagagaatttagcacaaaaaaaa 1936656  T
Q  99 --tagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgagcacatgtttatgtgaac 196  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1936657 aatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgagcacatgtttatgtgaac 1936756  T
Q  197 atcattgtttcatttcgagcacatgctcaattgttcttctctcccattgtactattcttggtgtgccaatct 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1936757 atcattgtttcatttcgagcacatgctcaattgttcttctctcccattgtactattcttggtgtgccaatct 1936828  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
Q  101 gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt 175  Q
    |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||   |||||||| ||||||    
T  34819621 gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt 34819695  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
Q  101 gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt 175  Q
    |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||   |||||||| ||||||    
T  37863950 gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt 37864024  T

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