View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_29 (Length: 250)
Name: NF3306_high_29
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 44348066 - 44347840
Alignment:
| Q |
9 |
agcagagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatca |
108 |
Q |
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| T |
44348066 |
agcaaagataagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatgacaacattgaaaaagtttttgaagacatcatca |
44347967 |
T |
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| Q |
109 |
cgtggcttgacaagcacgccaacaatgatgcctatgaatctacacatccaattgagaattgtaaccatgacattgagacattgacaccagttgtatcatc |
208 |
Q |
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| T |
44347966 |
catggcttgacaagcacgccaacaatgatg---------------atccaattgagaattgtaaccatgacattgagacattgacaccagttgtatcatc |
44347882 |
T |
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| Q |
209 |
agcaaagactatgaaacaatctcataggcgaaaaagttatct |
250 |
Q |
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| T |
44347881 |
agcaaagactatgaaacaatctcataggcgaaaaagttatct |
44347840 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 39562604 - 39562662
Alignment:
| Q |
18 |
aagacaattaaattgtaccctggaatgtggcatggtttaacatctggtgagcctgatga |
76 |
Q |
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| T |
39562604 |
aagaccataaaattgtaccctggaatgtggcatggcttaacagctggggagcctgatga |
39562662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 52216378 - 52216331
Alignment:
| Q |
9 |
agcagagataagacaattaaattgtaccctggaatgtggcatggttta |
56 |
Q |
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| T |
52216378 |
agcaaagataagacactgaaattgtaccctggaatgtggcatggttta |
52216331 |
T |
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