View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_3 (Length: 520)
Name: NF3306_high_3
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 38 - 518
Target Start/End: Original strand, 52049084 - 52049564
Alignment:
| Q |
38 |
tggatgtagagaaaaacacattcaactcactcaattatgttttgtacgcaaatactacnnnnnnntgcggagcctttctgtttttgtgtggtggtctggc |
137 |
Q |
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| T |
52049084 |
tggatgtacagaaaaacacattcaactcactcaattatgttttgtacgcaaatactacaaaaaaatgcggagcctttctgtttttgtgtggtggtctggc |
52049183 |
T |
|
| Q |
138 |
cttgtagatcttcaatttgcacgtattgtaagattttggnnnnnnnaattggcattacaataagaaacaaacattggagagtgttttaatgtttacttgt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049184 |
cttgtagatcttcaatttgcacgtattgtaagattttggcccccccaattggcattacaataagaaacaaacattggagagtgttttaatgtttacttgt |
52049283 |
T |
|
| Q |
238 |
gattacaattgcaagttgaggatatgatcactattcaataagcatgtctttgtgttttgagtggactgaagagtgtggtccaagatgttgcaacagttgt |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049284 |
gattacaattgcaagttgaggatatgatcactattcaataagcttgtctttgtgttttgagtggactgaagagtgtggtccaagatgttgcaacagttgt |
52049383 |
T |
|
| Q |
338 |
ggtttattcaaaaccagaatgcttcagcaaagataacgggattttcccttctggctgttacattaatggaaacattttatgtgtccttgcctgtgacagt |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049384 |
ggtttattcaaaaccagaatgcttcagcaaagataacgggattttcccttctggctgttacattaatggaaacattttatgtgtccttgcctgtgacagt |
52049483 |
T |
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| Q |
438 |
ttttcttcttaaatgctccactgttttcagtaacttggtagttttgtgttgatttgattaagtgtttgtactttaattgat |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52049484 |
ttttcttcttaaatgctccactgttttcagtaacttggtagttttgtgttgatttgattaagtgtttgtactttaattgat |
52049564 |
T |
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