View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_33 (Length: 247)
Name: NF3306_high_33
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1223558 - 1223393
Alignment:
| Q |
1 |
tttttgacgaagattattcattgttgaacgatgataaaaacatcgtacacataccat-aaannnnnnnnngaaccaaccgtcaaaaatcaattaaagatg |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |
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| T |
1223558 |
tttttgacgaagattattcattgttaaacgatgataaaaacatcgtacacatacaataaaatatttttttgaaccaaccgtcaaaaatcaattaaagatg |
1223459 |
T |
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| Q |
100 |
ataannnnnnnnacggcgcatctctaattctagtaattactagaaagagaaaaagaatccaactcaaatt |
169 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
1223458 |
ataa-tttttttacggcgcatctctaattctagtaat---tagaaagagaaaaagagtccaactcaaatt |
1223393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 1223369 - 1223327
Alignment:
| Q |
188 |
cttcgtcaagttggttagtggttagcccacacaccgtaagtat |
230 |
Q |
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| T |
1223369 |
cttcgtcaagttggttagtggctagtccacataccgtaagtat |
1223327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 41960821 - 41960656
Alignment:
| Q |
1 |
tttttgacgaagattattcattgttgaacgatgataaaaacatcgtacacataccat-aaannnnnnnnngaaccaaccgtcaaaaatcaattaaagatg |
99 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| ||||||||||||||||||||| |
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| T |
41960821 |
tttttgaggaagattattcattgttgaacgatgataaaaacatcgtacatatacgataaaatatttttttaaaccaactgtcaaaaatcaattaaagatg |
41960722 |
T |
|
| Q |
100 |
ataannnnnnnnacggcgcatctctaattctagtaattactagaaagagaaaaagaatccaactcaaatt |
169 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41960721 |
ataa-tttttttacggcgcatctctaattctagtaat---tagaaagagaaaaagaatccaactcaaatt |
41960656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 41960631 - 41960590
Alignment:
| Q |
189 |
ttcgtcaagttggttagtggttagcccacacaccgtaagtat |
230 |
Q |
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| T |
41960631 |
ttcgtcaagttggttagtggctagaccacacaccgtaagtat |
41960590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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