View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_37 (Length: 239)
Name: NF3306_high_37
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44670964 - 44671196
Alignment:
| Q |
1 |
tttgtttgaaatatatcttctgctaagatcatgaatctaaatcccaagaatgaccagagttcatcaataagaaagtagggggaggaaatgcaaggtgcat |
100 |
Q |
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| T |
44670964 |
tttgtttgaaatatatcttctgctaagatcatgaatctaaatcccaagaatgaccagagttcatcaagaagaaagtagggggaggaaatgcaaggtgcat |
44671063 |
T |
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| Q |
101 |
aataaaaccatcacgttccgtagtagtttatttcacaacctaaaagggattgattaatacaatttaatttaatcctcctccctaa------------tat |
188 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
44671064 |
aataaaaccatgacgttccgtagtagtttattt--caacctaaaagggatagattaatacaatttaatttaatcctcctccctaatatgatatcgactat |
44671161 |
T |
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| Q |
189 |
ggatattacttattaacatttcttcatttctctgt |
223 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
44671162 |
ggttattacttattaacatttcttcatttctctgt |
44671196 |
T |
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