View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_4 (Length: 474)
Name: NF3306_high_4
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 34335738 - 34336199
Alignment:
| Q |
1 |
tgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacaatctagaacttggtcgtgatgcatcag |
100 |
Q |
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| T |
34335738 |
tgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacgatctagaacttggtcgtgatgcatcag |
34335837 |
T |
|
| Q |
101 |
tgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaatgctacctcagaacatcttgtagcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335838 |
tgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaatgctacctcagaacatcttgtagcata |
34335937 |
T |
|
| Q |
201 |
tgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaaggattacatgccgggaagagtcttcttgat |
300 |
Q |
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| T |
34335938 |
tgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaaggattacatgccgggaagagtcttcttgat |
34336037 |
T |
|
| Q |
301 |
caagcatcgcagaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacnnnnnnnnttatatttatcaggaggatt |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34336038 |
caagcatcgcaaaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacaaaaaaaattatatttatcaggaggatt |
34336137 |
T |
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| Q |
401 |
aaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336138 |
aaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
34336199 |
T |
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