View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_42 (Length: 228)
Name: NF3306_high_42
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_42 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 1936347 - 1936569
Alignment:
| Q |
6 |
aggagcacagattgcaattgaagactgttattccatgtgagcagttcacatctacaacctgcgtgaatgattggaacatttgtcatctctaaaattgatt |
105 |
Q |
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| T |
1936347 |
aggatcacagattgcaattgaagactgttattccatgtgagcagttcacatctacaacctgcgtgaatgattggaacatttgtcatctctaaaattgatt |
1936446 |
T |
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| Q |
106 |
tacaagtatagcggtcctcaacaacgacaattcgaacttctctatgatttttatcgatagcgtggagattgttggttgcaaaactggtggaaaatctggc |
205 |
Q |
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| T |
1936447 |
tacaagtatagcggtcctcaacaacgacaattcgaacttctctatgatttttatcgatagcgtggagattgttggttgcaaaactggtggaaaatctggc |
1936546 |
T |
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| Q |
206 |
atcatcattaaatccataaaact |
228 |
Q |
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| T |
1936547 |
atcatcattaaatccataaaact |
1936569 |
T |
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