View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_5 (Length: 473)
Name: NF3306_high_5
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 23013983 - 23013682
Alignment:
| Q |
18 |
caccgtggcggcgctctttcttgctgaaggcgaggcaccatgggagaggagggtatatgccagggtg----aaattggcatggataggggagaatggact |
113 |
Q |
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| T |
23013983 |
caccgtggcggcgctctttcttgctgaaggcgaggcaccatgggagaggagggtatatgccagggtggcacaaattggcatggataggggagaatggact |
23013884 |
T |
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| Q |
114 |
gacctgagaaataggcttaggaaatcgatgggaccgatatcacatggacaacacatgcaacaagataacagcaggcat--ggatgattaggaagggaaaa |
211 |
Q |
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| T |
23013883 |
gatatgagaaataggcttaggaaatcgatgggaccgatatcacatggacaacacatgcaacaagaaaacaacaggcatatggatgattaggaagggaaaa |
23013784 |
T |
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| Q |
212 |
aggtcatgttcagaagggaacaattccaattcaataagaaggttttcgacgatcagaggagagggaggtctatctcactattttgtaatcgtgtttcaat |
311 |
Q |
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| T |
23013783 |
aggtcatgttcagaagggaacaattccaattcaataagaaggttttcgacaatcagaagagagggaggtctatctcactatgtcgtaatcgtgtttcaat |
23013684 |
T |
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| Q |
312 |
ta |
313 |
Q |
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|| |
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| T |
23013683 |
ta |
23013682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 311 - 455
Target Start/End: Complemental strand, 23023213 - 23023066
Alignment:
| Q |
311 |
ttagtatcggaattttcaataacttgcaaatatatctacacccttataaatacaagatgttaaccttttgcatt---ctgcaggtattttgattttttaa |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23023213 |
ttagtatcggaattttcaataacttgcaaagatatctacacccttataaatacaagatgttaaccttttgcattaatctgcaggtattttgattttttaa |
23023114 |
T |
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| Q |
408 |
cctatgaagaatttccacctacatcatttataaataattgatttattt |
455 |
Q |
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| T |
23023113 |
cctatgaagaatttccacctacatcatttataaataattgatttattt |
23023066 |
T |
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